Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04097 ATGCCTCCATCATCCCCTGAGATCGCTCTCTCTGATTTCCTCCTTCTCGATGATTTCCTTCATCATCATCATGGTGACTCTCTATCATCTCAAAGCACTGAGTCATCGGAAAAACCAACCTTCAGTGATACCACTCATGGATTCACCACTGGTGCAACCTCTAAGAACAACAACAACATCATAAAGTGCAAGAACACGAATGGTGGAAGTAAAGCAAGGTTGGGTCCAAGAGTGGCATTCAGAACTAAATCAGAGCTTGAGGTCATGGATGATGGATACAAGTGGAGGAAGTATGGTAAGAAGTCCGTGAAGAGCAGTCCAAATCTAAGGAACTATTACAAATGTTCAAGTGGAGGATGCAGTGTGAAGAAAAGGGTGGAAAGGGACAGAGAGGATTCCAGCTATGTGATAACAACATATGAAGGTGTACACAATCATGAGAGCCCTTTTACCACATACTACAGCCCTATCTCTTTCCTACATTCTGATCATTCTACTTCTTCCAAATGA 510 0.4294 MPPSSPEIALSDFLLLDDFLHHHHGDSLSSQSTESSEKPTFSDTTHGFTTGATSKNNNNIIKCKNTNGGSKARLGPRVAFRTKSELEVMDDGYKWRKYGKKSVKSSPNLRNYYKCSSGGCSVKKRVERDREDSSYVITTYEGVHNHESPFTTYYSPISFLHSDHSTSSK 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04097 169 Pfam WRKY DNA -binding domain 90 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g04097 169 SUPERFAMILY WRKY DNA-binding domain 81 149 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g04097 169 MobiDBLite consensus disorder prediction 29 66 - -
Vimu11g04097 169 MobiDBLite consensus disorder prediction 25 73 - -
Vimu11g04097 169 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 152 IPR044810 GO:0003700
Vimu11g04097 169 ProSiteProfiles WRKY domain profile. 84 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g04097 169 FunFam WRKY transcription factor 57 75 149 - -
Vimu11g04097 169 Gene3D WRKY domain 75 150 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g04097 169 SMART WRKY_cls 89 148 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04097 Vimu-Chr11 62656588 62657753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04097 62 164 WRKY Transcription Factor Family AT5G64810 64.815 4.15e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g04097 WRKY 1.8e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04097 - - gmx:100500248 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04097 11 62656588 62657753 Vimu11g04097 11 62656588 62657753 ECH