Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04092 ATGGCGCCGAATCAGATAACGCGAAAGGTTAGCAGAAACCCCGAATTGATAAGGGGCATTGGGAAGTACTCGAGATCGCAGATGTACCACAAGAGAGGGATTTGGGCTATAAAGGCTAAAAACGGCGGCGTTTTCCCTCGCCACGACCCTACTCCCAAACCTCAATCTCCCGCTCTTAAACCTCCCAAATTTTACCCTGCTGATGATGAAAAGAGTGTGTTGCCCCAGCAGAAGAAAGATGACCAGAAAACTGTGGACTCTGTATTGATAAAAGCCATAGAGAGTGTGCCGGAGTTGAATGCTTATCTGGGTGCCAGGTTTTCCTTAAAGGATGGTGTGAAACCTCATGAGCTAGTCTTTTAG 363 0.4738 MAPNQITRKVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKNGGVFPRHDPTPKPQSPALKPPKFYPADDEKSVLPQQKKDDQKTVDSVLIKAIESVPELNAYLGARFSLKDGVKPHELVF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04092 120 PANTHER 60S RIBOSOMAL PROTEIN L6 70 120 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vimu11g04092 120 Pfam Ribosomal protein L6e 61 120 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vimu11g04092 120 MobiDBLite consensus disorder prediction 43 84 - -
Vimu11g04092 120 MobiDBLite consensus disorder prediction 64 84 - -
Vimu11g04092 120 Pfam Ribosomal protein L6, N-terminal domain 8 58 IPR005568 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04092 Vimu-Chr11 62615364 62616523 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04092 1 78 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 69.231 7.24e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04092 K02934 - zju:107408703 135.961