Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04083 ATGAAAAGGGCACTCCCTCCCAATGCCAAAATCTCAAAGGAAGCTAAAGAAACAGTTCAAGAGTGTGTGTCTGAGTTCATCAGCTTCATCACCGGTGAGGCCTCAGACAAGTGCCAGAGAGAAAAGAGGAAGACCATCAACGGTGATGATCTTCTCTGGGCCATGACAACCTTAGGATTTGAGAACTACGTTGGACCCTTGAAGCTCTACCTCAACAACTACAGAGAAACTGAGGGAGAAAAGAGTTCCATGGCCAAACAAGAAGAACACTCTCCAACTCATCAAACCAATGATGGGGTGCCTGAACTCAACAAGCTGCCTCATTCTGCTGCAACAAAGCCAGACTTCAACTCCTTCACTGCTGGCTTCTATTCTGTGGGGCCTCAATTAACACCTTCAAAGAGCTTCACAGATATTGGAGGAATCAACGGTTATAGAGACACCTCCATGAACAGTGTCATTGCTCAAAGTGCGGTCAGTGCTGATCAAGATGCAAGTGGTAATAGAATGATGCCATCCAACCTACGTTATAGGGTTGAATGGTAG 546 0.4597 MKRALPPNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEKSSMAKQEEHSPTHQTNDGVPELNKLPHSAATKPDFNSFTAGFYSVGPQLTPSKSFTDIGGINGYRDTSMNSVIAQSAVSADQDASGNRMMPSNLRYRVEW 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04083 181 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Vimu11g04083 181 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 96 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu11g04083 181 MobiDBLite consensus disorder prediction 80 107 - -
Vimu11g04083 181 Gene3D Histone, subunit A 1 113 IPR009072 GO:0046982
Vimu11g04083 181 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Vimu11g04083 181 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Vimu11g04083 181 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Vimu11g04083 181 MobiDBLite consensus disorder prediction 80 95 - -
Vimu11g04083 181 SUPERFAMILY Histone-fold 1 104 IPR009072 GO:0046982
Vimu11g04083 181 ProSitePatterns NF-YB/HAP3 subunit signature. 22 38 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04083 Vimu-Chr11 62561692 62562806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04083 1 88 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.955 1.49e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu11g04083 CBFD_NFYB_HMF 6.3e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04083 K08065 - gmx:100810059 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04083 11 62561692 62562806 Vimu11g04083 11 62561692 62562806 ECH