Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04080 ATGTTGGCCGGTTCAATAGATACTTCTGCAACAGCAATAGAGTGGACACTTTCGGAGCTGATAAAGAATCCAAGGGTGATGAAGAAACTCCAAATGGAACTGGAAAGCGTGGTGGGTATGGAGAGGAAGGTGGAAGAATCAGACTTAGAGAAGTTAGAGTATTTGGACATGGTTATAAAGGAAAGCATGAGGCTGCATCCAGTGGCACCGTTGCTGATACCACACGAGTCAAGGGAAGATTGCATGGTTGGAGAGTTTTTCATTCCTAAAAGGTCAAAGGTGATAGTGAATGCATGGGCTATTATGAGAGACCCAAGTGCTTGGGATGATGCAGAAAAGTTCTGGCCAGAGAGATTTGAGGGAAGCAGCATAGATCTAAAAGGGCATGACTTTGAGCTGATACCATTTGGATCTGGAAGAAGAAGCTGTCCAGGAATGCAGCTTGGTCTGACTCTGGTTCGTCTGACAGTGTCACAAGTTGTCCATTGTTTTGATTGGAAGCTTCCAAATAACATGTTATCATCTGAGTTGGACATGACAGAGGAGTTTGGACTCTCCATGCCAAGGGCCAATCATCTTCTTGCCATTCCCAGTCAACGCCTTCACTGTCACACTGATTCATGA 624 0.4503 MLAGSIDTSATAIEWTLSELIKNPRVMKKLQMELESVVGMERKVEESDLEKLEYLDMVIKESMRLHPVAPLLIPHESREDCMVGEFFIPKRSKVIVNAWAIMRDPSAWDDAEKFWPERFEGSSIDLKGHDFELIPFGSGRRSCPGMQLGLTLVRLTVSQVVHCFDWKLPNNMLSSELDMTEEFGLSMPRANHLLAIPSQRLHCHTDS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04080 207 PRINTS P450 superfamily signature 134 143 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g04080 207 PRINTS P450 superfamily signature 57 68 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g04080 207 PRINTS P450 superfamily signature 143 154 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g04080 207 PRINTS P450 superfamily signature 4 21 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g04080 207 Pfam Cytochrome P450 1 188 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g04080 207 SUPERFAMILY Cytochrome P450 1 197 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g04080 207 Gene3D Cytochrome P450 1 203 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g04080 207 PANTHER CYTOCHROME P450 93A3-LIKE 1 202 - -
Vimu11g04080 207 FunFam Predicted protein 2 195 - -
Vimu11g04080 207 PRINTS E-class P450 group I signature 143 166 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g04080 207 PRINTS E-class P450 group I signature 13 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g04080 207 PRINTS E-class P450 group I signature 97 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g04080 207 PRINTS E-class P450 group I signature 56 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g04080 207 PRINTS E-class P450 group I signature 133 143 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g04080 207 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 136 145 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04080 Vimu-Chr11 62527457 62528080 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04080 1 203 Monolignol Biosynthesis Gene Families AT4G36220 53.922 1.46e-77 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04080 K20562 - vun:114179959 377.096