Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04073 ATGGAGGCTTGCAGATTTCTTTATTCTTCTGGTCTTACTAATCAAATTGACCTTTTTCTGCTTTACCCTAGTACGATTCCTTATGATCAACGTCACTCCTTAATGTCAGAGGAGGTTTCTCATGGAATATTTGGAACATCTGTGAAGTACAACCAAGATCATAATAGATTGGTTGATAAGACACAAAGACGTCTTGCTCAAAATCGAGAGGCTGCTCGGAAGAGTCGTTTGAGGAGAAAGGCATACGTGCAACAGTTGGAATCATGTCGTTTGAAGCTGATGCAGTTAGAGCAAGAGGTAGATCATGCTAAACGACAGGGATTGTATATTGGTGACCGATTGGGTTCTAATAATTTGGGTTTTGCTGGCTCTGTAAATTCAGGAATAGCAACTTTTAAGATGGAGTACGAACATTGGGTAGAGGAGCAAAACAGACATATCTTGGAAATGAGAACTGCTTTAAGTTCTCAGATAGGTGACATGCAACTGGGGAACCTTGTACAAAGCATAATGAACCACTACTCCAAACTCTTTAGCATGAAATCTGCTGCTGCAAAAGCTGATATTTTCTACGTTATGTCTGGCATGTGGATGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTTAAGGTTCTGATCCCTCTGAGTGGACCTTTGACAGAGCAACAACTGTTTGATACATATGGCCTAGAAAAATCATGCCAACAAGCAGAAGATGCCCTTTCACAAGGAATGGAAAAACTTCAGCAAATGCTTGCTGACAGTGTTGGGCGAGGACACTTAGTTGAAGGAAGCCACATTCCACAGATGGATACTGCGATGGAGAGATTGGAAGCTCTGGTGAGCTTTGTCAATCAGGCTGATCATCTACGACAAGAAACCTTGCGGCAAATGTATCGAATACTTAGCATACGTGAGATTGGTCAGTTTCTGCTTGTTCTAGGAGAATATTTTCAACGCTTAAGGGCTTTGAGCAAACTTTGGGCTAATCGATCTCGAGAAGCACTTCCTTAG 1038 0.42 MEACRFLYSSGLTNQIDLFLLYPSTIPYDQRHSLMSEEVSHGIFGTSVKYNQDHNRLVDKTQRRLAQNREAARKSRLRRKAYVQQLESCRLKLMQLEQEVDHAKRQGLYIGDRLGSNNLGFAGSVNSGIATFKMEYEHWVEEQNRHILEMRTALSSQIGDMQLGNLVQSIMNHYSKLFSMKSAAAKADIFYVMSGMWMTTAERFFLWIGGFRPSELLKVLIPLSGPLTEQQLFDTYGLEKSCQQAEDALSQGMEKLQQMLADSVGRGHLVEGSHIPQMDTAMERLEALVSFVNQADHLRQETLRQMYRILSIREIGQFLLVLGEYFQRLRALSKLWANRSREALP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04073 345 SUPERFAMILY Leucine zipper domain 60 103 IPR046347 GO:0003700|GO:0006355
Vimu11g04073 345 FunFam BZIP family transcription factor 59 108 - -
Vimu11g04073 345 Pfam Seed dormancy control 147 221 IPR025422 GO:0006351|GO:0043565
Vimu11g04073 345 Coils Coil 242 262 - -
Vimu11g04073 345 Gene3D - 59 108 - -
Vimu11g04073 345 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 63 78 IPR004827 GO:0003700|GO:0006355
Vimu11g04073 345 ProSiteProfiles DOG1 domain profile. 129 339 IPR025422 GO:0006351|GO:0043565
Vimu11g04073 345 SMART brlzneu 56 116 IPR004827 GO:0003700|GO:0006355
Vimu11g04073 345 Pfam bZIP transcription factor 60 88 IPR004827 GO:0003700|GO:0006355
Vimu11g04073 345 Coils Coil 79 106 - -
Vimu11g04073 345 PANTHER TRANSCRIPTION FACTOR TGA9 37 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04073 Vimu-Chr11 62484886 62488264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04073 7 342 Calmodulin-binding Proteins AT5G10030 62.426 2.82e-151 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu11g04073 DOG1 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04073 K14431 - gmx:100780003 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04073 11 62484886 62488264 Vimu11g04073 11 62484886 62488264 ECH
Vimu11g04073 11 62484886 62488264 Vimu6g01657 6 15263335 15266274 PCT