Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04069 ATGAGAAGGTCTGTGTGTGAGTTCTTGTATGAGCTTTATGCCAAGACAATAGTTCTTTTAACATACATGTTAATACAACTTATCCTTATCATTCGCTACCTTAAATCAAACACACCTGCAATATCAACCACCCAATACCTCAGTTTCATCGAAGAGAAGAACCCCGCCATTCGTTGCACCACAAGACTCAAGGCAGAGCACATAGACTGCAGAGTTTGTCTCTCTGAATTCCAGGAAGGGGAGAAGGTCAGGAACCTCAACTGCAGACACACTTTTCACAAGGATTGCTTGGACCAGTGGTTGCAGCAATACTGTGCTACTTGCCCACTTTGCAGACACAAGGTCTTGCCAGATCATGTTGTCGCCAACTACAACCTCCTTCAAAATCATCTACAAGAAGAAGAAGAAGAAGACTACGATGGCAATGATCACCAACTCATCTTTTTCTTATCTGCATTAAGGGGTGGTAGCACTTGGCACACATATCTCTGA 492 0.4329 MRRSVCEFLYELYAKTIVLLTYMLIQLILIIRYLKSNTPAISTTQYLSFIEEKNPAIRCTTRLKAEHIDCRVCLSEFQEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRHKVLPDHVVANYNLLQNHLQEEEEEDYDGNDHQLIFFLSALRGGSTWHTYL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04069 163 PANTHER - 4 158 - -
Vimu11g04069 163 SMART ring_2 70 111 IPR001841 -
Vimu11g04069 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 117 IPR013083 -
Vimu11g04069 163 SUPERFAMILY RING/U-box 49 127 - -
Vimu11g04069 163 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Vimu11g04069 163 Pfam Ring finger domain 69 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04069 Vimu-Chr11 62440383 62443184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04069 69 122 C3H Transcription Factor Family AT1G15100 57.407 7.65e-18 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04069 K16282 - gmx:102669811 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04069 11 62440383 62443184 Vimu11g04069 11 62440383 62443184 ECH
Vimu11g04069 11 62440383 62443184 Vimu6g01655 6 15236360 15237386 PCT