Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04038 ATGTACAACAACAGCAACATCGTACCGGAATTCCTAGATCCGTACAGTGAGGAGCTGATGAAAGCACTTGAGCCTTTTGTGAAAACCTCTCCTCAATCACACGCTCCTTCTTCTTATTCTCTCATTTCATCTACTTCGTATCCCTCCCCCAACCAAATCAAGCTCAACAAACTCACCCCAGACCAAATCCTCCAGATTCAAGCACAGACTCAACGTCAAAACCAACCCCAGCTGGGCCCAAAACGTCTTCCCATGAAGCACGGTGGCGCGGCGGCGAAAGCCGCCAAACTGTACCGCGGGGTGAGGCAACGGCATTGGGGGAAGTGGGTCGCCGAGATCAGACTCCCGAAGAACCGGACGCGCCTATGGCTGGGAACATTCGACACCGGAGAAGAAGCGGCGTTGGCGTACGACAACGCAGCGTTTAAGCTCAGAGGCGAGTTCGCGCGCCTCAACTTCCCTCATCTGCGACACCAGGGAGCGTTCGTATTCGGTGAATTCGGAGATTACAAGCCTCTACCTTCTTCCGTCGACTCCAAGCTCCAAGCTATTTGCGAAAGCTTGGCGAAACAAGAACAACAAAAAACGGGTTGCTCTGTCGAAGACGTGAAGCCGGAGGTACACACTGCTCAAAACGGGAACGAGAACCGAATGTTATCATCGCCTGTGTCTGGCGAGTCGTCTTCGCCTGAATCGGGTGTGACTTTCTTGGATTTCTCGGACTTCGCACATTCTAATTATGAGTGGGATGAAATGGAGAGCTTTAGGTTAGAGAAGTACCCTTCGGTGGAGATTGATTGGGCATCTATATGA 813 0.5178 MYNNSNIVPEFLDPYSEELMKALEPFVKTSPQSHAPSSYSLISSTSYPSPNQIKLNKLTPDQILQIQAQTQRQNQPQLGPKRLPMKHGGAAAKAAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGEEAALAYDNAAFKLRGEFARLNFPHLRHQGAFVFGEFGDYKPLPSSVDSKLQAICESLAKQEQQKTGCSVEDVKPEVHTAQNGNENRMLSSPVSGESSSPESGVTFLDFSDFAHSNYEWDEMESFRLEKYPSVEIDWASI 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04038 270 SUPERFAMILY DNA-binding domain 97 155 IPR016177 GO:0003677
Vimu11g04038 270 Gene3D AP2/ERF domain 97 155 IPR036955 GO:0003700|GO:0006355
Vimu11g04038 270 MobiDBLite consensus disorder prediction 209 231 - -
Vimu11g04038 270 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Vimu11g04038 270 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Vimu11g04038 270 MobiDBLite consensus disorder prediction 206 231 - -
Vimu11g04038 270 CDD AP2 98 156 IPR001471 GO:0003700|GO:0006355
Vimu11g04038 270 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Vimu11g04038 270 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Vimu11g04038 270 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
Vimu11g04038 270 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 270 - -
Vimu11g04038 270 FunFam Ethylene-responsive transcription factor 2 96 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04038 Vimu-Chr11 62217072 62218022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04038 13 270 AP2-EREBP Transcription Factor Family AT4G39780 53.731 3.79e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g04038 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04038 K09286 - gmx:100797648 385.571