Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04010 ATGGCTGAGGCCAGACAGTACTTTCCCCCCTCTCAATTGGGTCAGCTTTTCTTCTCTTTGATTCCCCTTTTATTGCTTGACATTCCAATAATTCAAACTCTGAAGAAAGAAACCCTTTTTAGAAATATCAAGCAAATTATCGTGGAAGCACAGCATCGATGGCTGCGTCCGGCTGAAATTTGTGCAATTCTCAGCAACTATAAGAAGTTTCGAATTGCTCCAGAACCTGCTACTATGCCACCAAGTGGTTCACTTTTCTTATTTGATCGGAAGGTGCTGAGATACTTCAGAAAAGATGGCCACAACTGGAGGAAGAAAAAAGATGGAAAAACAGTAAGAGAAGCACATGAGAGACTAAAGGCTGGAAGTGTTGATGTGTTGCACTGCTACTATGCTCATGGAGAAGAAGATGAGAGTTTTCAGAGACGCACGTATTGGCTGCTTGAAGAGGAACTCTCTAACATTGTTCTAGTTCATTATCGACAAGTGAAGGGAACCAAGGCAAATTATACGTGTGCTAAAGAAAATGAAGAATCTCTTCCTTGTGCTCAACAAACTGACAAAATTATGCTCAAAGCAGAGATGGACACTTCTTTTTCGTCCGCTCTTCATCCAAACAGTTACCAGGTTCCTTCACAAACTATGGATTCAAGCATGAACAGTGCCCAAGCATCAGAATATGAGGAAGCTGAATCTGCATTCAATAGCCATGCAAGTTCTGAGTTTTATTCTTTCTTTGAGTTACAACGCCCTGTTGATGAGATTATAGATCAACCTGCTGATTCTTATTCTCCTCACCCACTCATAAGAAAGTCCATAACTAACATGAGTTTTTCTATTGAAACTGGGACAGATGAGCAAAAGAAGTTACCTGTCATTGCTGAGATGGATTATATCTCACTCACCCAAGACAGAAAATTAATAGACATTCTTAGTGGTGGATTGACATATGAATCCCCCAAACCCCTGGGATTTTCCTCATGGGAAGATATCTTAGAAAGTAATGGTGAAAGTCAACACATGCCTTTTCAGCCTTTATTTCCTGAAATGCAACCTGCTGACATGGCAGTCAATAGCAATTTTTGTCAAGGATATGACATAATGGTGCCACATTTGACCAACAGCATTGCTAAGCTGCATGACAATGGAAGTCTCATACAAGCTGAAGGAAGTTGGCAGGGATATAGTGTTGATTCTTTACGTGTGTCCAGTTCGCCTATAGACAATGTCCATTCAAGCTCAACATGTGAGGTTAGTTGTAGCAACTGTGAGCATGAAGTTAATGAAGTTGATATTCAGAAATCCTTGCAACAGTCTCTTCTCCATCAACACAAACAAAACAAGGTTCTCATGCTAAATGATCCTCAAGAGGTAATGCTTGATTATCTAAAATCAGATTTTGAGGCCAGTAGAACCCTGGATGGAATAGAAGACCCACCTTTCACTTTTAAAAGGACTCTGTTAGATGGATCCCCAGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAGCTTGGAGATGTGGAAGAATCAAATAAACCATCTACTTCTGGTGGTTATTGGGATACAGTTGAAAGTGAAAGTGAGGTTGGCAGCACAACTATTCCTTCCCAAGGGCACCTGGACACCTATGTATTGGATCCATCTGTTTCCAATGAGCAGCTTTTTAGCATTATTGACTATTCACCAAGCTGGGCATTTGAAGGGTCAGAAGTTAAGATTATCATTTCTGGGCGATTCTTAAGAAGCCAACAAGAAGCAGAACAATGTAAATGGTCATGCATGTTTGGTGAGGTAGAAGTGCCAGCAGTGATACTTGCAAAAGATGTTCTTAGCTGTCATACTCCTCAACACAAGGCTGGGAGGGTACCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGCAGTGAAGTGCGAGAATTTGATTTCCAAGTCAACTGTACTCAAGAAGTCAACACTGCAGGTGAGGATAGAGCCAGCATTTTTCATACTCTTAGTAGACGATTTGGAGAACTGTTGTCCCTGGGGCATGCCGTTCCTCAGAATTCAGATTCAATCAGCGGAAATGAGAAATCTCAACTGAGAAGCAAAATCAGTTCTTTGCTAAGAGGGGAGGATGATGTTTGGGACAAGCTACTGGAACTTACTCAAGAGAACGATTTTTCTACAGAAGATTTACAGGAGCAGCTGCTTCAAAATCTTCTAAAAGATAAGTTGCACGCATGGCTCCTTCAGAAAATTACAGACGATGGAAAAGGCCCCAATGTATTGGACGAGGGTGGCCAAGGTGTGCTTCATTTTGCTGCTGCTCTTGGCTACGATTGGGCACTAGAACCCACACTAGTTGCTGGTGTGAATGTGAACTTTCGTGACATAAATGGATGGACTGCTCTTCATTGGGCAGCATTTTATGGCAGGGAGCGCACGGTGGCTTTCCTCATTTCTCTTGGCGCAGCACCTGGATTACTGACTGACCCATGTCCAGAACATCCTTCTGGTAGAACACCAGCTGATCTAGCTTCTACAAATGGGCATAAAGGAATTGCAGGGTATCTCGCAGAATCTTCACTAAGTGCACAGCTCACTACTCTTGATTTGAACAAGGATGTGGGAGAAAATTCTGGAAACAAAGTGGTGCAAAGAATCCAAAACACTGCCCCAGTTAATGATCTTGACGGTCCATCATATGAGCAGTCACTGAAAGATTCATTAGCTGCAGTGTGCAATGCCACCCAAGCTGCGGCTCGTATTCATCAAGTTTTCAGAATGCAATCATTCCAGAGAAAGCAGCTGAAGGAATTTGGCGATGACAAATTTGGAATATCTGACGAACGTGCTCTTGCACAAGTAAAAAAGAATGGGAAATCACACAAGTCTGGATCACGCGATGAGCCGGTCCATGCTGCTGCAATACGTATCCAGAACAAATTCCGCGGTTGGAAGGGCAGAAAAGATTTTTTGATGATTCGACAACGTATAGTAAAAATTCAGGCTCACGTGAGAGGACACCAGGTTAGGAAAAATTGTGGGAAGATAATTTGGTCTGTTGGGATATTGGAGAAAGTTATTTTGCGTTGGCGTCGAAAAGGTAGTGGTTTGAGAGGATTTAAATCAGAGGCCAATTCTGAAATAACTATGATAGAAGATGTAACATCCTCTGAGGATGACTATGATGTCTTAAAAGAAGGCAGGAAGCAAACAGAGCAAAGATTGCAGAAAGCTCTGGCCAGGGTGAAGTCAATGATTCAGTATCCAGAGGCAAGGGACCAATACCATAGGGTCTTGAATGTCGTAACTCAGATCCAAGAAAATCAGGTAAATCATGATAGCAGTTGTAACAATTCAGAAGAAATAAGAGACTTCAATAACCTCACTGATCTTGAAGCACTGTTGGACGAAGATATTTTCATGCCTACAGCAACTTAG 3444 0.4199 MAEARQYFPPSQLGQLFFSLIPLLLLDIPIIQTLKKETLFRNIKQIIVEAQHRWLRPAEICAILSNYKKFRIAPEPATMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEEDESFQRRTYWLLEEELSNIVLVHYRQVKGTKANYTCAKENEESLPCAQQTDKIMLKAEMDTSFSSALHPNSYQVPSQTMDSSMNSAQASEYEEAESAFNSHASSEFYSFFELQRPVDEIIDQPADSYSPHPLIRKSITNMSFSIETGTDEQKKLPVIAEMDYISLTQDRKLIDILSGGLTYESPKPLGFSSWEDILESNGESQHMPFQPLFPEMQPADMAVNSNFCQGYDIMVPHLTNSIAKLHDNGSLIQAEGSWQGYSVDSLRVSSSPIDNVHSSSTCEVSCSNCEHEVNEVDIQKSLQQSLLHQHKQNKVLMLNDPQEVMLDYLKSDFEASRTLDGIEDPPFTFKRTLLDGSPAEEGLKKLDSFNQWMSKELGDVEESNKPSTSGGYWDTVESESEVGSTTIPSQGHLDTYVLDPSVSNEQLFSIIDYSPSWAFEGSEVKIIISGRFLRSQQEAEQCKWSCMFGEVEVPAVILAKDVLSCHTPQHKAGRVPFYVTCSNRLACSEVREFDFQVNCTQEVNTAGEDRASIFHTLSRRFGELLSLGHAVPQNSDSISGNEKSQLRSKISSLLRGEDDVWDKLLELTQENDFSTEDLQEQLLQNLLKDKLHAWLLQKITDDGKGPNVLDEGGQGVLHFAAALGYDWALEPTLVAGVNVNFRDINGWTALHWAAFYGRERTVAFLISLGAAPGLLTDPCPEHPSGRTPADLASTNGHKGIAGYLAESSLSAQLTTLDLNKDVGENSGNKVVQRIQNTAPVNDLDGPSYEQSLKDSLAAVCNATQAAARIHQVFRMQSFQRKQLKEFGDDKFGISDERALAQVKKNGKSHKSGSRDEPVHAAAIRIQNKFRGWKGRKDFLMIRQRIVKIQAHVRGHQVRKNCGKIIWSVGILEKVILRWRRKGSGLRGFKSEANSEITMIEDVTSSEDDYDVLKEGRKQTEQRLQKALARVKSMIQYPEARDQYHRVLNVVTQIQENQVNHDSSCNNSEEIRDFNNLTDLEALLDEDIFMPTAT 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04010 1147 Pfam CG-1 domain 49 162 IPR005559 GO:0003677
Vimu11g04010 1147 SUPERFAMILY E set domains 564 649 IPR014756 -
Vimu11g04010 1147 MobiDBLite consensus disorder prediction 517 541 - -
Vimu11g04010 1147 ProSiteProfiles Ankyrin repeat profile. 799 831 IPR002110 GO:0005515
Vimu11g04010 1147 FunFam Calmodulin-binding transcription activator 2 971 1019 - -
Vimu11g04010 1147 ProSiteProfiles IQ motif profile. 995 1019 IPR000048 GO:0005515
Vimu11g04010 1147 Gene3D Immunoglobulins 556 653 IPR013783 -
Vimu11g04010 1147 MobiDBLite consensus disorder prediction 512 541 - -
Vimu11g04010 1147 SMART ANK_2a 838 867 IPR002110 GO:0005515
Vimu11g04010 1147 SMART ANK_2a 799 828 IPR002110 GO:0005515
Vimu11g04010 1147 ProSiteProfiles CG-1 DNA-binding domain profile. 43 169 IPR005559 GO:0003677
Vimu11g04010 1147 SMART CG_1_2 46 164 IPR005559 GO:0003677
Vimu11g04010 1147 FunFam Calmodulin-binding transcription activator 2 728 875 - -
Vimu11g04010 1147 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 42 1110 - -
Vimu11g04010 1147 Pfam IPT/TIG domain 564 638 IPR002909 -
Vimu11g04010 1147 Pfam Ankyrin repeats (3 copies) 771 866 IPR002110 GO:0005515
Vimu11g04010 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 965 1021 IPR027417 -
Vimu11g04010 1147 SMART iq_5 971 993 IPR000048 GO:0005515
Vimu11g04010 1147 SMART iq_5 994 1016 IPR000048 GO:0005515
Vimu11g04010 1147 ProSiteProfiles IQ motif profile. 973 1001 IPR000048 GO:0005515
Vimu11g04010 1147 Pfam IQ calmodulin-binding motif 973 992 IPR000048 GO:0005515
Vimu11g04010 1147 Pfam IQ calmodulin-binding motif 997 1014 IPR000048 GO:0005515
Vimu11g04010 1147 FunFam Calmodulin-binding transcription activator 2 557 653 - -
Vimu11g04010 1147 Coils Coil 1063 1083 - -
Vimu11g04010 1147 SUPERFAMILY Ankyrin repeat 744 860 IPR036770 -
Vimu11g04010 1147 Gene3D - 970 1018 - -
Vimu11g04010 1147 ProSiteProfiles Ankyrin repeat region circular profile. 799 824 - -
Vimu11g04010 1147 Gene3D - 722 888 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04010 Vimu-Chr11 61984197 61990265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04010 87 362 CAMTA Transcription Factor Family AT2G22300 43.972 4.86e-53 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vimu11g04010 Ank_2 1e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04010 K21596 - gmx:100798875 1801.95