Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04005 ATGAAGCAATGTCGGGGCGAGGCCACGTGGAAGTGCTCGTGCGGAACCACGTTTTCGCGGAAGGACAAGCTGTTCGGACACGTGGCGCTGTTCGAGGGGCATTTGCCTATGCTTGAAGAGGAGAAGGAGACCTCGGCGGTGACGGCAGCAGCGGCGGTGGAAGGGTTGGTGAAGGAAAGTGACGGTAGTTTGGATGGGTTACCTGAAGGGTTCTTTGATGGGTTGGATGAATTTGGATTTGGTTCAAGTGAAAGTACCTCTTCACCGGAAGAAACTTCGCCTTGGGGTTTCCCACAAATGGAAACTCATTTCTAA 315 0.5302 MKQCRGEATWKCSCGTTFSRKDKLFGHVALFEGHLPMLEEEKETSAVTAAAAVEGLVKESDGSLDGLPEGFFDGLDEFGFGSSESTSSPEETSPWGFPQMETHF 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04005 104 MobiDBLite consensus disorder prediction 79 104 - -
Vimu11g04005 104 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 2 51 IPR044300 GO:0010044|GO:0010447
Vimu11g04005 104 MobiDBLite consensus disorder prediction 80 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04005 Vimu-Chr11 61937645 61938279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04005 2 49 C2H2 Transcription Factor Family AT1G34370 63.265 1.55e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04005 - - vum:124823301 173.711