Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04003 ATGAACTTACCGGTCAAAGAACAAGATGATGAATTGATGGTGTTGAAGCTTGAAACACTGGAGCTCCTAGTTGTTTTCTGTTGTTGGAACAGATTGGATCAGTGGAGGAAATTGGTGACAATAAAATGGAAGGAAGCGAAGAAGAAGGAATTACTTGTCTTTCTCTTTCACCATACTTTAACGCTTCGCCATTACTCAACTTTCCCTTTCGCTAACAAACTTTCCTTCTATTCTCTTCTCACCAAGTGCAACTTCACCGTCCATGACCTACAACCGGCTACTCCGGTACCTGATTCCGATTTTCAGTTTCTCTCTCTTCTGAGTTTCTTGCTTGTTCATCTTTTGCCCAACCCTTTTCTTCTTTACCCATCTTTTGTCCCTTTGCGCGCACGCTTTGGTCTGTTCGCTGATTTTTCCGCTATTGGTTGTCACGTTCAGAGTGATTGCTTTTCTAGATCTTTTCTGGATAGCTTGGCTGTGGCTATCCAGTGGATGATGCCAGTAGAAATGGGCTTCTTATTTGTGTTATTGATATTGGGTTGCTTATGTTCTTTTGTGTTTCCTGACACGCAAGGAGATGCACTATATGCATTGAAGTCGTCACTGAATGCTTCAGCTCACCAGCTTACTGACTGGAATCAAAATCAAGTGAATCCTTGCACTTGGTCCCGTGTTTACTGTGACTCAAACAACAATGTCATCCAAGTATCACTAGCATATATGGGATTCACAGGATACTTGACACCGAGAATAGGAGTACTAAAATATGCTACAGCTCTAATTGATGTATATTATACATGTATTAGTTCTTTGCAAGGGAATGGCATCACTGGCAGCATACCAAAAGAGATAGGAAACATGACAAGCTTGTGCAGGTTGGATTTGGAAAACAATAAATTAACTGGAGAAATACCTTCTTCCCTTGGTAATCTTAAAAAGCTCCAGTTCTTAACATTGAGTCAAAACAATCTTAGTGGGACTATTCCTGAATCACTTGCCACTCTTCCAATCTTGATCAATGTTATGCTAGATTCAAATAATCTGAATGGCAAAATCCCAGAGCGGTTATTTGAGGTTTCTAAATACAATTTCACTGGAAATAATTTGGATTGTGGTCATCGACTTTGCGAATCTGATAATGCAGACCAAGGTTCATCACATAAATCAAAAACTGGCCTCGTTGTTGGAATTGTTATAGCGCTAGTTGTTATCCTTTTCCTTGGTGGTCTGCTGTTCTTTTGGTGTAAGGGTAGAGACAAGGGCTACAGGCGTGAAGTTTATGTAGATGTTCCAGGGGAAGTTGATCGGCGAATTGCGTTTGGTCAGCTAAAACGATTTGCATGGAGAGAATTACAGATAGCTACAGACAACTTCAGTGAGAAGAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTGCTGATAATACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAGGTTGAGATGATAAGTGTAGCTGTGCATAGGAACCTGTTACGGTTGATTGGGTTTTGTACTACCCCGACTGAGCGTCTCTTGGTTTATCCCTTTATGCAGAACTTAAGTGTTGCCTATCGTCTTCGAGTGGTTGTGTTCAAGAATCAGCCGGTCATAGTTGCTCTACCTAAATATTATATCATTACCCCTCTTGACATGAGTAATGCTGTAGTTAAGAAATTAGAACGGGAGAAGAGACTAGACGCCATTGTTGATCGCAACCTAAATAAAAATTACAACCTACTAGAGGTAGAAATGATGATACAAGTTGCGTTACTCTGTACGCAAGCAACGCCAGAGGACCGTCCACCAATGTCTGAGGTGGTAAGAATGCTTGAAGGAGAAGGGTTGGCTGAAAGGTGGGAGGAATGGCAGCACGTGGAGGTCAATCGGAGACAAGAATACGAGAGATTACAAAGAAGATTTGATTGGGGAGAAGATTCCGTCTATAATCAAGATGCCATTGAGTTGTCTGGTGGGAGATAA 2034 0.4135 MNLPVKEQDDELMVLKLETLELLVVFCCWNRLDQWRKLVTIKWKEAKKKELLVFLFHHTLTLRHYSTFPFANKLSFYSLLTKCNFTVHDLQPATPVPDSDFQFLSLLSFLLVHLLPNPFLLYPSFVPLRARFGLFADFSAIGCHVQSDCFSRSFLDSLAVAIQWMMPVEMGFLFVLLILGCLCSFVFPDTQGDALYALKSSLNASAHQLTDWNQNQVNPCTWSRVYCDSNNNVIQVSLAYMGFTGYLTPRIGVLKYATALIDVYYTCISSLQGNGITGSIPKEIGNMTSLCRLDLENNKLTGEIPSSLGNLKKLQFLTLSQNNLSGTIPESLATLPILINVMLDSNNLNGKIPERLFEVSKYNFTGNNLDCGHRLCESDNADQGSSHKSKTGLVVGIVIALVVILFLGGLLFFWCKGRDKGYRREVYVDVPGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRVVVFKNQPVIVALPKYYIITPLDMSNAVVKKLEREKRLDAIVDRNLNKNYNLLEVEMMIQVALLCTQATPEDRPPMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSGGR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04003 677 Gene3D Transferase(Phosphotransferase) domain 1 561 648 - -
Vimu11g04003 677 Pfam Leucine rich repeat 271 324 IPR001611 GO:0005515
Vimu11g04003 677 Gene3D Phosphorylase Kinase; domain 1 427 534 - -
Vimu11g04003 677 Pfam Protein tyrosine and serine/threonine kinase 461 545 IPR001245 GO:0004672|GO:0006468
Vimu11g04003 677 SUPERFAMILY L domain-like 190 369 - -
Vimu11g04003 677 SUPERFAMILY Protein kinase-like (PK-like) 438 628 IPR011009 -
Vimu11g04003 677 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 565 639 - -
Vimu11g04003 677 Gene3D Ribonuclease Inhibitor 188 379 IPR032675 -
Vimu11g04003 677 FunFam Protein NSP-INTERACTING KINASE 2 565 648 - -
Vimu11g04003 677 FunFam Putative LRR receptor-like serine/threonine-protein kinase 188 380 - -
Vimu11g04003 677 Pfam Leucine rich repeat N-terminal domain 188 228 IPR013210 -
Vimu11g04003 677 ProSitePatterns Protein kinases ATP-binding region signature. 464 486 IPR017441 GO:0005524
Vimu11g04003 677 FunFam Somatic embryogenesis receptor kinase 1 427 534 - -
Vimu11g04003 677 ProSiteProfiles Protein kinase domain profile. 458 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04003 Vimu-Chr11 61912708 61926119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04003 574 677 Receptor kinase-like Gene Family AT5G10290 83.654 1.90e-50 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu11g04003 PK_Tyr_Ser-Thr 6.4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04003 - - gmx:100793416 648.662