Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04000 ATGGCAATAACACCCTTTAGTAGTACATCTACTGCACAATGGGGAGTTCATCCTCAGCTGTTTGTGAGATCCAGTATTACAGGCAAGGTTGCATCATCCAGCCACAATGTTACCAGCAGGGTAAGCTTCATGGCTGCATCAAGTTCAAGCTTTTTTTCTCGAGATTCCACACTGCTCAATGTGGCTGCACCCCAAACTTTTAACCATCGCAAGGGATCAAGGTTGATTGTTAGAGCTGATGCAGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAGCAAATCTGAAATTAAGAGCGGTAATTTTATCATAGAAATATCAAAGTTCTGGCTTTTTCACATTTCAGCGTATCGGAAGCTTGCCCGGAATTATCATCCGGATGTCAACAAAGAACCTGGAGCTGACCAAAAGTTTAAAGAAATCAGCAACGCATATGAGGTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTGGACTTAAAGGTTCTGGAATGGGGATGGGGGATTTTAGCAATCCATTTGATCTGTTCGAATCATTGTTTGAAGGCATGAATCGCGGTACAGGTTCTAGAGGTTCTTGGAACGGTGCAATTGATGGTGAAGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCAGTTTTTGGCATAGAAAAGGAGATAGAGATAAGCCGATTAGAGAGCTGCGGAACTTGCAATGGCTCAGGGGCTAAACCAGGGACTACACCAACCAGATGTAGCACTTGCGGAGGTCAAGGACGGGTTGTCTCTTCAACAAGAACTCCGTTAGGTATCTTCCAGCAGTCAATGACATGCTCTTCATGCAATGGGAGGGGCGAAATTTCAACACCTTGCAATACATGTTCTGGGGATGGTCGGGTGAGGAAATCGAAGAGGATAAGTCTGAAGGTCCCAGCTGGTGTGGACTCTGGTAGTCGTCTAAGGGTCCGAAATGAGGGGAATGCTGGAAAGAGAGGTGGTTCCCCTGGCGACCTCTTCGTAGTTATTGAGGTTATCCCAGATCCTGTCCTTAAACGAGATGACACTAACATTTTGTACTCCTGCAAGGTTTCTTATATTGATGCAATCCTTGGGACTACAATTAAGGTTCCTACTGTAGACGGAACGGTGGACTTAAAAATTCCTGCTGGGACACAACCCAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCCTTCCTTAATAAAAACAATATGAGAGGTGATCAGTTGGTTCGTGTGCAAGTTGAAATCCCTAAAAGACTCAACAATGATGAGAGAAAGCTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTACCACAGGTAGGAGATAG 1362 0.4361 MAITPFSSTSTAQWGVHPQLFVRSSITGKVASSSHNVTSRVSFMAASSSSFFSRDSTLLNVAAPQTFNHRKGSRLIVRADADYYSVLGVSRNASKSEIKSGNFIIEISKFWLFHISAYRKLARNYHPDVNKEPGADQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPFDLFESLFEGMNRGTGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPTRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGRGEISTPCNTCSGDGRVRKSKRISLKVPAGVDSGSRLRVRNEGNAGKRGGSPGDLFVVIEVIPDPVLKRDDTNILYSCKVSYIDAILGTTIKVPTVDGTVDLKIPAGTQPNTTLVMAKKGVPFLNKNNMRGDQLVRVQVEIPKRLNNDERKLIEELADLSKGKTTTGRR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04000 453 SMART dnaj_3 81 154 IPR001623 -
Vimu11g04000 453 FunFam Chaperone protein dnaJ 1, mitochondrial 346 453 - -
Vimu11g04000 453 SUPERFAMILY HSP40/DnaJ peptide-binding domain 204 358 IPR008971 GO:0006457|GO:0051082
Vimu11g04000 453 SUPERFAMILY Chaperone J-domain 79 193 IPR036869 -
Vimu11g04000 453 ProSiteProfiles Zinc finger CR-type profile. 223 304 IPR001305 GO:0031072|GO:0051082
Vimu11g04000 453 PRINTS DnaJ domain signature 84 102 IPR001623 -
Vimu11g04000 453 PRINTS DnaJ domain signature 118 133 IPR001623 -
Vimu11g04000 453 PRINTS DnaJ domain signature 154 173 IPR001623 -
Vimu11g04000 453 PRINTS DnaJ domain signature 134 154 IPR001623 -
Vimu11g04000 453 NCBIfam molecular chaperone DnaJ 82 442 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vimu11g04000 453 Gene3D - 236 299 - -
Vimu11g04000 453 ProSiteProfiles dnaJ domain profile. 82 162 IPR001623 -
Vimu11g04000 453 SUPERFAMILY HSP40/DnaJ peptide-binding domain 351 437 IPR008971 GO:0006457|GO:0051082
Vimu11g04000 453 Pfam DnaJ central domain 236 299 IPR001305 GO:0031072|GO:0051082
Vimu11g04000 453 ProSitePatterns Nt-dnaJ domain signature. 139 158 IPR018253 -
Vimu11g04000 453 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 42 449 - -
Vimu11g04000 453 FunFam Putative Mitochondrial DnaJ chaperone 292 341 - -
Vimu11g04000 453 CDD DnaJ_C 207 429 - -
Vimu11g04000 453 CDD DnaJ 82 151 IPR001623 -
Vimu11g04000 453 Pfam DnaJ domain 116 159 IPR001623 -
Vimu11g04000 453 FunFam Chaperone protein dnaJ A6 chloroplastic 79 198 - -
Vimu11g04000 453 Hamap Chaperone protein DnaJ [dnaJ]. 79 449 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vimu11g04000 453 Gene3D - 206 341 - -
Vimu11g04000 453 Pfam DnaJ C terminal domain 211 426 IPR002939 -
Vimu11g04000 453 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 223 303 IPR036410 -
Vimu11g04000 453 CDD DnaJ_zf 236 299 IPR001305 GO:0031072|GO:0051082
Vimu11g04000 453 Gene3D DnaJ domain 79 199 IPR036869 -
Vimu11g04000 453 FunFam Molecular chaperone DnaJ 228 304 - -
Vimu11g04000 453 Gene3D - 346 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04000 Vimu-Chr11 61875767 61880806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04000 82 176 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 35.417 5.99e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04000 K03686 - gmx:100811006 822.772