Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03997 ATGGAGGAGGAAGAGCACGAGGTGTACGGAGGAGAGATCCCCGACGAGGGTGAGATGGAAGGAGATGTCGATATGTCCGCCGCCGACGATGACGCTGCCGTCAAGGAGCTCGACGAGATGAAGCGCCGATTGAAGGAGATGGAGGAGGAAGCCGCAGCGCTTCGCGAGATGCAAGCCAAGGTCGAGAAGGAAATTGGCAGCGTTCAAGATCCTGCTAATGCAGCTGCTTCTCAAGCAAACAAGGAGGAGGCAGATTCTCGGTCTGTTTTTGTTGGCAATATATGGATGTGGTACACTAGGCATTACTCGTATGTCAGGGTTACTTTAAATGGTAACCAATGTGAAATTGTGGAGATTATACTCGAATGTGTTAAAGATGCATCAACTTCACCCTTGGAGGAGACAGCTTGTGGTTCTTTTGGAAGAACATTCTGTAAGTGCTGGGCATGCAATCCTAGTGTTAGAGCCCTATTGTTGATTGCAGTGTGGTCTGTAGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCCTGTGGTACTGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGTTGAAGCTGTTCAAGAGGCTCTCGTCTTGAATGAATCTGAACTGCATGGTAGGCAACTGAAGGTTTTACCTAAGAGGACCAATGTCCCTGGAATGAAACAACATCGTCCTAGGCGGTTTAATCCTTACATGGCATACGGCTTCAGGAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATATGGGAAGGTTCCTAGGTTTAGAAGGCCAAATCGTTACATGCCGTACTACTAG 864 0.4734 MEEEEHEVYGGEIPDEGEMEGDVDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGSVQDPANAAASQANKEEADSRSVFVGNIWMWYTRHYSYVRVTLNGNQCEIVEIILECVKDASTSPLEETACGSFGRTFCKCWACNPSVRALLLIAVWSVVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQHRPRRFNPYMAYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03997 287 Gene3D - 64 233 IPR012677 -
Vimu11g03997 287 CDD RRM_II_PABPs 166 231 - -
Vimu11g03997 287 Coils Coil 30 64 - -
Vimu11g03997 287 SUPERFAMILY RNA-binding domain, RBD 167 255 IPR035979 GO:0003676
Vimu11g03997 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 235 IPR000504 GO:0003723
Vimu11g03997 287 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 246 - -
Vimu11g03997 287 MobiDBLite consensus disorder prediction 1 23 - -
Vimu11g03997 287 SMART rrm1_1 166 231 IPR000504 GO:0003723
Vimu11g03997 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 229 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03997 Vimu-Chr11 61849920 61864745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03997 166 230 Eukaryotic Initiation Factors Gene Family AT2G36660 34.848 1.91e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03997 K14396 - gmx:100789721 245.743