Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03992 ATGGAACGGTATGAGATAATCAAAGATATTGGGTCAGGGAACTTTGGTGTGGCAAAGCTCGTCAAGGAAAAATGGACTGGTGAATTATACGCTGTCAAGTTCATTGAGAGAGGCTTCAAGATTGATGAGCACGTGCAAAGAGAGATTATAAATCACAGGTCTTTGAAGCACCCCAATATCATTAGATTCAAAGAGGTGTTGCTTACTCCAACTCATCTTGCAATAGTCATGGAATATGCTTCCGGGGGAGAACTGTTTGAAAGAATATGCAGTGCTGGGAGATTCAGTGAGGACGAGGTAGTGCTTTTGTCCAACATGGCCATTGCAAGATATTTCTTTCAGCAATTGATTTCTGGAGTCAGCTATTGCCATTCAATGGAAATTTGCCATAGGGATCTTAAGCTGGAAAACACACTTCTAGATGGAAGCTCAGCACCACGACTTAAAATCTGCGACTTTGGAACCCCTGCCTATATTGCACCAGAGGTTTTGTCAAGAAAAGAATATGATGGGAAGGTTGCAGATGTTTGGTCTTGTGGGGTGACCTTATATGTGATGTTGGTTGGTGCATATCCTTTTGAAGACCCAGAAGACCCAAGAAACTTCAGAAAAACACTTCAGCGAATTCTCAGCGTCCACTATTCTATTCCAGACTATGTACGTATCAGTAAAGAGTGTAGACACCTTTTGTCTCGAATATTTGTGGCCAACCCAGAAAAGCAGAGAATTACCATACCAGAGATAAAAATGCACCCTTGGTTCCTGAAGAACTTACCAGTAGAATTTATGGAGGAGGGAGAAGGAGTGTTGCAAAATGACATGAAGGAATCGTGTGAGACTCAAAGCATTGAAGAAATACTGTCCATAATTCAAGAGGCTAGAAAACCGGGTGAGGGCCCAAGAGTTGGTGGGCAATTTGTTGGGGGCAGCATGGACCTTGATGACATTGATGCAGATGCTGACATCGATGATATTGAGACAAGCGGTGATTTTGTCTGTGCTTTGTGA 1008 0.4266 MERYEIIKDIGSGNFGVAKLVKEKWTGELYAVKFIERGFKIDEHVQREIINHRSLKHPNIIRFKEVLLTPTHLAIVMEYASGGELFERICSAGRFSEDEVVLLSNMAIARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGTPAYIAPEVLSRKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTLQRILSVHYSIPDYVRISKECRHLLSRIFVANPEKQRITIPEIKMHPWFLKNLPVEFMEEGEGVLQNDMKESCETQSIEEILSIIQEARKPGEGPRVGGQFVGGSMDLDDIDADADIDDIETSGDFVCAL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03992 335 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vimu11g03992 335 Gene3D Transferase(Phosphotransferase) domain 1 80 261 - -
Vimu11g03992 335 FunFam Serine/threonine-protein kinase SAPK2 1 79 - -
Vimu11g03992 335 SUPERFAMILY Protein kinase-like (PK-like) 2 262 IPR011009 -
Vimu11g03992 335 Pfam Protein kinase domain 4 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03992 335 FunFam Serine/threonine-protein kinase SRK2A 80 262 - -
Vimu11g03992 335 ProSiteProfiles Protein kinase domain profile. 4 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03992 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vimu11g03992 335 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vimu11g03992 335 SMART serkin_6 4 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03992 335 PANTHER SERINE/THREONINE KINASE 2 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03992 Vimu-Chr11 61808162 61810643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03992 3 264 CBL-interacting serine-threonine protein kinases AT4G24400 41.197 1.29e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vimu11g03992 Pkinase 9.9e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03992 K14498 - gmx:100807981 588.186