Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03980 ATGGGAAAAACCAAAATTTCCAATCTCTTTGCCAATGGCACCAGTCATTACATTCTTCCTAAATCCAATGCTACAAGGCAAACACTTGTAGAACGACCAAGTTCCCACAAAGATCGCTTTCCCTTTTCACTCTTTGGATTCTTTCGCTGCTTCATTCCTTCAAGAAAAGTAGATGGAGGCTCAAAAACCGAGGACGAGCAGAAAGTCTACTCTTGGTTATACACTTTGGCTCAGACTGATAAGAACTTGGTCTTTGAGTACGTTAGGTCCACTGAAAGAGGCAAGTGTCTTCACACTATGCTATGTGGTTTAAATAGTTGTGTCATATTGGCAGGCTTAAGTTTCAGAGAAGCAGAGAGGAGACTTCGGGAAAATGGGCCAAATGTTCCACTTGAGTATTCCTTTCCAAGATGGTGGAGTCTTCTACGGAACGCTCTTTTTCACCCTTTTAATATCATTCTGATTATTCTGTCAGTTATGTCATTCATTGCCCGTGACAGTCCAAATGGATTTATCATGCTCGTGTTGGTTTTCATCAGTGTGACCCTCCGTTTCTATCAGGAATACAGCAGCTCAAAAGCAGCAATGAAGCTTTCAGAATTTGTAAAATGTCCAATAAAAGTTCAAAGATGCGCTGGTAGAGTTGTTCAGAAAGAACTTATTGTTCAAGTTGATCATAGGGATGTAGTTCCAGGTGACATTGTAATTTTTGAACCTGGAGACCTCTTTCCTGGAGATATCAGATTGTTATCTTCCAAACAACTTGTTGTAAGCCAGGCCTCACTAACTGGGGAATCTTGGACAACTGACAAAGCTTCTGATATCAGAGAAGACTACAATACTCCTTTATTGGATTTAAAAAACATCTGTTTCATGGGCACAAACGTGGTATCAGGTACTGGAACAGGCCTAGTGGTTTCAACTGGATCCAAGACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGATTTTGAAAAGGGTCTCAGATGGATATTTTACTTGATTATTTCTGTTATGCTAGTAGTTGTCACCATCCTGTTTGTGATGCTTCCCCTCATCATTAACACATGCCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGGTGTATAGTAAAGAGTTTAACATCTATACGCGATATGGGATCAATGGATATTCTTTGTATTGACAAGACAGGCTCCCTTACAATGAATCATGCAGTCATGGTTAATCATCTTGATTACAGGGGTTTACCCCAAGAAAAAGTTTTACGCTATGCCTTCCTCAACTCTTACTTTAAGACTGATCAGAAGTATCCTCTGGATGATGCTATTCTGGCATTCGTATATTCAAATGGATTCAGGTTTCGGCCATCACTGTGGAGGAAAATAGATGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACAGACACTCAAAATTCTTTGGCAGGTTCATGGTAACAAAAGGAGCACTATTAGAAGTATTGAAAGTTTGTTCTTTCATTGAGAATTTCGAACAAGATGAAATTTCCCCCTTCTCTTTCGATGATTATCAGCGTATTTTAAATCTTTCAGAAGATATTAGCAATGAAGGGTTAAGGATTCTAGGAGTAGCTATAAGGAAGCTGGAAATGCCGCAAACATGTGAAACAAGTAATGGAAGCAAGAGAGAAGACGAGGATATCGAAAAAGACATGGTGTTCCTTGGCCTAATAACATTTTTCGACCCACCTAAGGACACAGCAAAGCAAGCATTGTGGCGTTTGTGTGAGAAGGGAGTGAAAGCAAAGGTTTTAACTGGTGATTCCCTCTCCCTGACAACAAGGGTATGCAGAGAAGTTGGCATAAGCACCGATCATGTAATAACAGGTCCTGAACTAGAGCTACTTGACCAAGACACGTTCCATGAGACAGTTAAAAGAGCCACAGTACTAGCACGTCTCACTCCAATTCAGAAACTCCATGTGGTGCAATCCTTGCAAACAGTTGGAAACCATGTTGTTGGGTTCTTAGGAGATGGAGTGAATGACTCACTGGCTTTAGATGCTGCGAATGTAAGCATTTCTGTGGATTCAGGAGTAGCCATTGCAAAAGACATGGCAGATATTATCTTACTTGAGAAAGACCTGAACGTGCTTGTTGCGGGAGTGGAGCATGGTAGACTCACTTTTGGCAACACAATGAAGTATGTTAAGATGTCAGTGATTGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACACTGGTATTCAAGTATGTGCCCTTAACTTCTACACAGCTTTTGACACAGAATTTCATCTACAGTGTGGGACAGATTGCCATCGCCTGGGACAAGATGGATGAAGAATATGTGAAGACACCTCACAAATCCTCAGAAAGAGGCTTGTCCATGTTCATACTGTGGAATGGATCAGTGTGCACTCTGTGTGATGTGGCAACACTCATGCTTCTTTGGTTTTATTACAAGGCTTACACTGATGTGACTCAGAAGTTTTTCCATTCAGCTTGGTTCATTGAAGGTGTTCTCTTGCAGACCTTCATCATCCACTTGATCAGGACTGAGAAAATCCCTTTCATGCAGGAGGTTGCATCTTGGCCTGTGATTTTCTCAACTGTTTTGACTTCTGCAATTGGAATTGCTCTTCCTTTCACACCCATTGGGAAGGTCATGGGATTCTCCCTTCTGCCCCTCTCATATTTCGGATTTTTGTTTATTCTTTTTCTTGGCTATTTTATAGTTGGCCATGTGGTTAAGAGACTTTACATATTGATTTATAAGAGGTGGCTTTGA 2817 0.4082 MGKTKISNLFANGTSHYILPKSNATRQTLVERPSSHKDRFPFSLFGFFRCFIPSRKVDGGSKTEDEQKVYSWLYTLAQTDKNLVFEYVRSTERGKCLHTMLCGLNSCVILAGLSFREAERRLRENGPNVPLEYSFPRWWSLLRNALFHPFNIILIILSVMSFIARDSPNGFIMLVLVFISVTLRFYQEYSSSKAAMKLSEFVKCPIKVQRCAGRVVQKELIVQVDHRDVVPGDIVIFEPGDLFPGDIRLLSSKQLVVSQASLTGESWTTDKASDIREDYNTPLLDLKNICFMGTNVVSGTGTGLVVSTGSKTYMSTMFSKVGKKKPPDDFEKGLRWIFYLIISVMLVVVTILFVMLPLIINTCLAKGALAMAKDRCIVKSLTSIRDMGSMDILCIDKTGSLTMNHAVMVNHLDYRGLPQEKVLRYAFLNSYFKTDQKYPLDDAILAFVYSNGFRFRPSLWRKIDEIPFDFIRRRVSVILETEDRHSKFFGRFMVTKGALLEVLKVCSFIENFEQDEISPFSFDDYQRILNLSEDISNEGLRILGVAIRKLEMPQTCETSNGSKREDEDIEKDMVFLGLITFFDPPKDTAKQALWRLCEKGVKAKVLTGDSLSLTTRVCREVGISTDHVITGPELELLDQDTFHETVKRATVLARLTPIQKLHVVQSLQTVGNHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIATLVFKYVPLTSTQLLTQNFIYSVGQIAIAWDKMDEEYVKTPHKSSERGLSMFILWNGSVCTLCDVATLMLLWFYYKAYTDVTQKFFHSAWFIEGVLLQTFIIHLIRTEKIPFMQEVASWPVIFSTVLTSAIGIALPFTPIGKVMGFSLLPLSYFGFLFILFLGYFIVGHVVKRLYILIYKRWL 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03980 938 Gene3D - 169 889 - -
Vimu11g03980 938 Pfam Cation transporter/ATPase, N-terminus 111 161 IPR004014 -
Vimu11g03980 938 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 389 585 IPR023299 GO:0000166
Vimu11g03980 938 SUPERFAMILY Calcium ATPase, transduction domain A 214 319 IPR008250 -
Vimu11g03980 938 Gene3D - 406 582 IPR023299 GO:0000166
Vimu11g03980 938 Gene3D - 204 308 - -
Vimu11g03980 938 SUPERFAMILY Calcium ATPase, transmembrane domain M 111 935 IPR023298 -
Vimu11g03980 938 Gene3D - 391 715 IPR023214 -
Vimu11g03980 938 Pfam E1-E2 ATPase 214 363 - -
Vimu11g03980 938 SUPERFAMILY HAD-like 569 726 IPR036412 -
Vimu11g03980 938 PRINTS Magnesium-transporting ATPase signature 841 862 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vimu11g03980 938 PRINTS Magnesium-transporting ATPase signature 736 751 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vimu11g03980 938 PRINTS Magnesium-transporting ATPase signature 786 799 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vimu11g03980 938 PRINTS Magnesium-transporting ATPase signature 891 912 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vimu11g03980 938 PRINTS Magnesium-transporting ATPase signature 333 349 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vimu11g03980 938 PRINTS Magnesium-transporting ATPase signature 754 765 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vimu11g03980 938 PRINTS Magnesium-transporting ATPase signature 806 822 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vimu11g03980 938 NCBIfam magnesium-translocating P-type ATPase 355 937 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vimu11g03980 938 PANTHER CATION TRANSPORTING ATPASE 337 928 - -
Vimu11g03980 938 NCBIfam HAD-IC family P-type ATPase 644 758 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g03980 938 Pfam haloacid dehalogenase-like hydrolase 391 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03980 Vimu-Chr11 61610224 61615508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03980 112 830 Primary Pumps ATPases(2) AT1G10130 25.620 6.03e-58 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03980 K01531 - pvu:PHAVU_002G260400g 1657.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03980 11 61610224 61615508 Vimu11g03980 11 61610224 61615508 ECH