Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03960 ATGCAGATTTGTCCCAAATTGCGGTGGCACTTTTTGGTCAAACTGAAAGACCATGACCATCAAATCCCACCTTTTTTTCCATTTCTGCAAAATCTAAATTCTTCTTTACTTGCTTCTGCATCATCTTTTCTCTTCTGCAAGATCCATAAGAAAAAGAAATCAAGTCAGAGAGTGAGACACAATCAATCAGTTCAGGTGAGAAAAATTCCAACTTATACCAAACACAACATTTCTCATTTACCATTTTTACCTTTCAAAGCTTTTTGCTTTTTGCTTTCAACCCATTATTACTTGGGTTGGTGGTTTGAAACCCAGTTAAAAAAAATCGAGTCTTGTCGATTACCCATGTTGGAAGAAGAGAGTAACAACGCCGACACCGGTGTTCATTGGAGAGCACATTCCAGATCAGTTTCTTGGACGGACCAGACTCCGGTGGTCCGGAAACCGCCGCGATCCCTTCAGCCTCTTTGCATCAGGAAAGACAGCGTGAAGGAGTGGCCGAGCGCCGGCAGCGACGATCTCGAGGTTTGGCTTCCGCCACCGACCCCAAGAGGGTCCACCAAAGGATCATCAAATTTGGGTTCGGGTTCGGGTCAAGTTTTTCAGCTTAGGAAAGACAAGTTGGCTTTCTACGACAAGGAATGTTCGAAAATCGCGGAGCACGTGTACTTGGGAAGTGACACGGTGGCAAAGAACGAGGAGGTTTTGCGGCGGCACGGGATAACGCACGTGCTGAATTGCGTGGGGTTCGTTTGCCCCGAGTATTTCAAAAGCGACTTCGTCTACAAAACGCTATGGCTGCGGGACAGTCCCACGGAGGACATCACAAGCATTCTCTACGACGTTTTCGATTACTTCGAGGATGTCCGACAACAGGGTGGGCGCGTGCTCGTACACTGCTGCCAGGGCGTGTCGCGCTCCACCTCGTTGGTCATCGCGTATCTCATGTGGAGGGAGAACCAGAGCTTCGAGGACGCGTTTCACTTCGTCAAGAACGCGCGTGGCATCATCAATCCGAACATGGGTTTCGCTTGTCAGCTATTGCAGTGTCAGAAGCGCGTGCACGCTACGCCCCCGAGTCCTAGTTCTGTGCTGAGAATGTACAGGATGGCTCCTCATTCTCCCTACGATCCTCTTCACCTTGTTCCTAAGATGGTGAACAACCCTTGCGCCCACGCGCTTGATTCGCGTGGGGCGTTTATTGTGCATGTTTCTTGTACTTTATATGTGTGGGTTGGGAAGGAGTGTGGCACGGTGATGTATTGCAAGGCGCGTCATGCAGCTGGTCAGGTTGTTCGATATGAGAGGGCGACTGGGGAGATAGTTACCGTGGTTGAGGATGAAGAGCCTGAGGAGTTTTGGGTTGCTCTTTCTCACAGGCATGAAGAGGTGAAGAACGTTGAAACAATGGAGGTTGATGTAGGGATTCATCCCCGGAGAGTTGAGGAGTATGATTTGGACTTTGGAATTTTTCACAAGGCACTTTCTGGTGGTGTTGTTCCACCCTTTTCTTTGTCCAAGGCTGGATCAGAAAATTGCCTCCCTTCTAAGGAAAATGGGTGGGTGAGATTGACTTGGAAGCTTACTGGAAGTACCATGAAAGGGTTCACATCCTCCAATATGAACATTGTAGAGGAAAATCACCACATGAATGTTGATCCTTTGCCTCCATCTTCTAAACCCTTTTACGATGAAGATGCGTCTGACTCAAAGATTTGCCCTTTACTTCAAAAAGAAGGTTTATCTTCATCTCCAGAGGCTTTTTTGGTTAATCACACCTTGGTCAGGGAAGAGTCTAGTTTAGCGTTCAAAGGGTCTAAACCCTCCATTGCAGAGCGCAGAGGGACTAACCTACCACCTCCTACGGTGCTCCTCTCGACCGGCAACAGTAAGGTCCGAGTAAGATCTAAGTCAATCTCATTACCTGCCTTGGATGATACTTTGTTGAGTGATGTTAGTTGCGAGCAATTCGACCATGAAAACAGTGGAAAATATAGTTAA 2001 0.4773 MQICPKLRWHFLVKLKDHDHQIPPFFPFLQNLNSSLLASASSFLFCKIHKKKKSSQRVRHNQSVQVRKIPTYTKHNISHLPFLPFKAFCFLLSTHYYLGWWFETQLKKIESCRLPMLEEESNNADTGVHWRAHSRSVSWTDQTPVVRKPPRSLQPLCIRKDSVKEWPSAGSDDLEVWLPPPTPRGSTKGSSNLGSGSGQVFQLRKDKLAFYDKECSKIAEHVYLGSDTVAKNEEVLRRHGITHVLNCVGFVCPEYFKSDFVYKTLWLRDSPTEDITSILYDVFDYFEDVRQQGGRVLVHCCQGVSRSTSLVIAYLMWRENQSFEDAFHFVKNARGIINPNMGFACQLLQCQKRVHATPPSPSSVLRMYRMAPHSPYDPLHLVPKMVNNPCAHALDSRGAFIVHVSCTLYVWVGKECGTVMYCKARHAAGQVVRYERATGEIVTVVEDEEPEEFWVALSHRHEEVKNVETMEVDVGIHPRRVEEYDLDFGIFHKALSGGVVPPFSLSKAGSENCLPSKENGWVRLTWKLTGSTMKGFTSSNMNIVEENHHMNVDPLPPSSKPFYDEDASDSKICPLLQKEGLSSSPEAFLVNHTLVREESSLAFKGSKPSIAERRGTNLPPPTVLLSTGNSKVRVRSKSISLPALDDTLLSDVSCEQFDHENSGKYS 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03960 666 SMART VILL_6 369 460 IPR007122 GO:0051015
Vimu11g03960 666 Gene3D Protein tyrosine phosphatase superfamily 197 356 IPR029021 -
Vimu11g03960 666 Pfam Dual specificity phosphatase, catalytic domain 222 352 IPR000340 GO:0008138|GO:0016311
Vimu11g03960 666 CDD DSP 215 349 - -
Vimu11g03960 666 MobiDBLite consensus disorder prediction 184 198 - -
Vimu11g03960 666 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 273 334 IPR000387 GO:0016311|GO:0016791
Vimu11g03960 666 MobiDBLite consensus disorder prediction 166 198 - -
Vimu11g03960 666 Gene3D Severin 366 464 IPR029006 -
Vimu11g03960 666 SMART dsp_5 214 353 IPR020422 GO:0006470|GO:0008138
Vimu11g03960 666 ProSitePatterns Tyrosine specific protein phosphatases active site. 298 308 IPR016130 GO:0016311|GO:0016791
Vimu11g03960 666 PANTHER MKPA PROTEIN 135 628 - -
Vimu11g03960 666 SUPERFAMILY Actin depolymerizing proteins 360 460 - -
Vimu11g03960 666 ProSiteProfiles Dual specificity protein phosphatase domain profile. 214 356 IPR020422 GO:0006470|GO:0008138
Vimu11g03960 666 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 207 356 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03960 Vimu-Chr11 61463962 61466001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03960 149 250 Protein tyrosine phosphatase (PTP) family AT3G55270 48.182 4.99e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03960 - - vra:106766435 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03960 11 61463962 61466001 Vimu11g03960 11 61463962 61466001 ECH