Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03937 ATGCTGGGCTACCCGATTCGGCATGGCCAGGTTGAGAACTGGGATGCCATGGAACGCTTCTGGCAGCAGTGCATATTCAACTATTTGAGGTGTGATCCGGAGGATCATTATTTCCTCTTGACCGAGAGTCCATTGACCGCACCTGAGAGCCGCGAGTATACTGGAGAAATCATGTTTGAGACTTTTAACGTGCCTGGACTTTATATTGCTGTTAATTCTGTGCTTGCTCTTGCAGCTGGGTACACAACATCTAAGTGTGAGATGACAGGAGTTGTAGTGGATGTTGGAGATGGGGCAACTCATGTGGTACCTGTTGCAGATGGCTACGTTATAGGTAGCAGTATCAAATCGATTCCTGTTGCTGGAAAGGATGTTACACTTTTTGTTCAGCAGCTTATGCGGGTGGGTAATCTCTGTAGTATTAAAATTAAAAGGTTATTATGTTGGTATTGTTCTCTCATTTGA 465 0.4473 MLGYPIRHGQVENWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATHVVPVADGYVIGSSIKSIPVAGKDVTLFVQQLMRVGNLCSIKIKRLLCWYCSLI 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03937 154 SUPERFAMILY Actin-like ATPase domain 88 137 IPR043129 -
Vimu11g03937 154 SMART actin_3 1 154 IPR004000 -
Vimu11g03937 154 Pfam Actin 3 136 IPR004000 -
Vimu11g03937 154 FunFam Predicted protein 6 91 - -
Vimu11g03937 154 Gene3D - 73 119 - -
Vimu11g03937 154 Gene3D Actin; Chain A, domain 4 120 135 - -
Vimu11g03937 154 PANTHER ACTIN 3 148 IPR004000 -
Vimu11g03937 154 SUPERFAMILY Actin-like ATPase domain 3 93 IPR043129 -
Vimu11g03937 154 CDD NBD_sugar-kinase_HSP70_actin 6 121 - -
Vimu11g03937 154 Gene3D - 2 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03937 Vimu-Chr11 61354234 61361628 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03937 2 133 Cytoskeleton Gene Families AT3G12110 44.697 1.03e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03937 K18584 - tcc:18609630 269.24