Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03924 ATGCCAGACCCCGGTGGTGGTGAACGTCATTCTGAGGCCAGTTCCGAGACTCTCAATTCTTCCATGCTTGGAAGCTCCATGAGCAGCGAGAGCATTTGCAGCACCAGTTTCAGCCGTCTTTCCTTCGATCTCCTCCCGCTCTCGCCCGAGAGTCTCTCCCTTAAGCCTCATCGCTCCTCCGACTTCGCCTACTCCGCCATTCGCTCCGCCGCCTTCTGCCGCAAGGCCGCCCTCACCTTCCGCGACTTCCATCTCCTCCGTCGCATCGGCTCCGGCGACATCGGTACCGTCTACCTCTGCCGCCTCCGAAACCGCCAATTCAACAGCCCCGTAGAGGACGAGGACGATGAAGAGTGCTGTTTGTACGCGATGAAGGTGGTGGACAAAGACGCAGTGGCATTGAAGAAGAAGTCGCAGAGAGCGGAAATGGAGAGAAAAATCCTGAAGATGCTGGACCACCCGTTCCTTCCTACTCTCTACGCGGAGTTCGAAGCCTCTCATTTCTCTTGCATTGTGATGGAGTTTTGCTCCGGCGGAGACCTTCACTCGCTGCGCTTCAAGCACCCTCACAACCGTCTCCCTCTCTCCTCCGCTAGATTTTATGCCGCGGAGGTGCTGGTGGCGTTGGAGTATTTACACATGCTGGGAATCATATACAGAGATTTAAAGCCCGAAAACGTGCTGGTGAGATCGGACGGTCACATCATGCTTTCTGATTTCGATCTCTCTCTTTGCTCGGATGCAATCCCAGCCGTTGAATCCTCAGATCCCTTACACAATCCATCGCCAAATGCATTACCTCAAACTTACACTCAAAGTCACACTCCCCCTCCCACTCGCTCGCATTCTTTTATCAGTCCATTCTCCTGCTTCTCGAACCGGGCTTTCCGGTCTCGTGACATGCGAGTCGTCGAACCGAACCGGCTCTTTGTAGCAGAACCGGTTTCGGCCCGCTCCTGCTCCTTCGTCGGAACCCACGAGTACGTCTCGCCAGAGGTTGCCTCCGGCAGGTCGCACGGTAACGCCGTTGACTGGTGGTCGTTTGGAGTATTTATCTACGAGCTTATATACGGTCGCACGCCGTACGCAGGTCCATCGAAGGAGGCTACGCTACGGAACATCGTGAAGAAGCCCCTGGCCTTCCCCACTGCCACGCCCGCGAGCTGTCTTGAACTCCACGCGCGAGATTTGATATCCGGCTTGCTGAACAAAGACCCGGCGCGTCGACTCGGGTCGAAGCGTGGCGCCGCTGACGTCAAGAAGCACCCCTTCTTCAAAGGGCTGAACCTGGCGCTGATTCGCATGCAGACGCCGCCCCTAGTGCCTGGCTCGAGAAGGACCAAAACGACGTCGCTGTACCCCGTGAAGGGTAGAAGCAACAGCAACCATCATAAACAGCATGAGACGGCGTCGTTTGATTTTTTCTTTTGA 1431 0.5597 MPDPGGGERHSEASSETLNSSMLGSSMSSESICSTSFSRLSFDLLPLSPESLSLKPHRSSDFAYSAIRSAAFCRKAALTFRDFHLLRRIGSGDIGTVYLCRLRNRQFNSPVEDEDDEECCLYAMKVVDKDAVALKKKSQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRFKHPHNRLPLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESSDPLHNPSPNALPQTYTQSHTPPPTRSHSFISPFSCFSNRAFRSRDMRVVEPNRLFVAEPVSARSCSFVGTHEYVSPEVASGRSHGNAVDWWSFGVFIYELIYGRTPYAGPSKEATLRNIVKKPLAFPTATPASCLELHARDLISGLLNKDPARRLGSKRGAADVKKHPFFKGLNLALIRMQTPPLVPGSRRTKTTSLYPVKGRSNSNHHKQHETASFDFFF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03924 476 SMART serkin_6 83 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03924 476 MobiDBLite consensus disorder prediction 442 459 - -
Vimu11g03924 476 MobiDBLite consensus disorder prediction 1 23 - -
Vimu11g03924 476 MobiDBLite consensus disorder prediction 442 465 - -
Vimu11g03924 476 MobiDBLite consensus disorder prediction 254 281 - -
Vimu11g03924 476 Gene3D Transferase(Phosphotransferase) domain 1 176 243 - -
Vimu11g03924 476 PANTHER FLIPPASE KINASE 1-RELATED 25 448 - -
Vimu11g03924 476 FunFam protein kinase PINOID 176 244 - -
Vimu11g03924 476 Gene3D Transferase(Phosphotransferase) domain 1 318 443 - -
Vimu11g03924 476 FunFam protein kinase PINOID 2 81 175 - -
Vimu11g03924 476 Pfam Protein kinase domain 83 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03924 476 Pfam Protein kinase domain 319 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03924 476 SUPERFAMILY Protein kinase-like (PK-like) 63 450 IPR011009 -
Vimu11g03924 476 ProSiteProfiles Protein kinase domain profile. 83 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03924 476 FunFam serine/threonine-protein kinase D6PK-like 317 443 - -
Vimu11g03924 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Vimu11g03924 476 MobiDBLite consensus disorder prediction 257 281 - -
Vimu11g03924 476 Gene3D Phosphorylase Kinase; domain 1 81 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03924 Vimu-Chr11 61257493 61259011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03924 25 475 AGC Kinase Gene Family AT2G34650 63.239 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu11g03924 Pkinase 4.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03924 - - vun:114177159 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03924 11 61257493 61259011 Vimu11g03924 11 61257493 61259011 ECH