Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03916 ATGGTCTTTAACTATGCAGTTATGCAGAGCCAACTTGTGTGCAATGGTTGTAGGAGCCTTCTGCTTTACCCGAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACGATTACTTCTGTTCCTCCACCTGGGATGGACATGTCTCAACTTTACTGTGGAGGCTGTAGGACGTTGCTGATGTACACTCGTGGAGCTACAAGTGTGAGATGTTCTTGCTGTCATACTGTAAACCTTGTTCCAGGACAAGGGCTTAGTATTGGTGGTTCTTGGGGCAAAATGGTTATGGTGATTTCCCTTGGAACTTATCTATCTATGGAGCTTTTGACTCTCACCCTGCTTCTTGGTATAACTTTAGTGTTTAAGGTAGCTCATGTCCATTGTGGGAACTGCCGGACAGCCCTCATGTATCCTTACGGAGCTCCCTCAGTCAAATGTGCTATTTGCCACTATATTACTAATGTTAATACGAACAATGGACGGCTTCCAATCCCTGTCCATAGACCCAATGGGACAGCCAATACTGGAACATTACCTTCTACTTCAACATCAATGCCTCAATCTCAAAGTCAAACAGTAGTAGTAGAAAATCCAATGTCTGTGGATTCGAGTGGGAAATTGGTGAGCAATGTTGTGGTCGGCGTCACAACAGATAAGAAATAG 663 0.4449 MVFNYAVMQSQLVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPGQGLSIGGSWGKMVMVISLGTYLSMELLTLTLLLGITLVFKVAHVHCGNCRTALMYPYGAPSVKCAICHYITNVNTNNGRLPIPVHRPNGTANTGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03916 220 Pfam LSD1 zinc finger 14 38 IPR005735 -
Vimu11g03916 220 Pfam LSD1 zinc finger 53 77 IPR005735 -
Vimu11g03916 220 Pfam LSD1 zinc finger 128 152 IPR005735 -
Vimu11g03916 220 NCBIfam zinc finger domain, LSD1 subclass 125 154 IPR005735 -
Vimu11g03916 220 NCBIfam zinc finger domain, LSD1 subclass 11 41 IPR005735 -
Vimu11g03916 220 NCBIfam zinc finger domain, LSD1 subclass 50 80 IPR005735 -
Vimu11g03916 220 PANTHER PROTEIN LSD1 9 219 IPR040319 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vimu11g03916 zf-LSD1 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03916 - - gmx:100776394 325.094