Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03914 ATGCTGACACCCTGGTGGTCGGCCACTCGGTTTGGTGGTCAGCCACTCGGCCTGGTGGATAGTCTTCTTAGGCATAAGCCGGAAATGGAAATCACATTGGAGTCTTCTGCTAGTCCGCAGCATAAAAAGGTACCAGCCAGATGGGATCCGGTTGAAGCATGCCGGCCTATAATTGATGAAGCACCTGTGTTCTATCCAACTATTGAGGAGTTTGAAGACACACTTGGTTACTTAGCTAAGATTCGCCCCCAAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCATGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAGTTTCCCACTCGTATCCAGCAAATTGATTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAATTAGGGGAAGGAAGCGAAAACGTAGAAAGCAATCAAAGATGGGAGCAGGTAGGAGAACTGCCAAATCAGGCTCTGAAGCTAATGTTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCTGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAAGGTTTTTAAAGATTGCTACTTTGGATTGAATGATGCCAATGAATATGGAAAAGTTAGCGATTATAATCACTGGCAGAAACGGGAGCCCTCTGTGGAAGACATTGAAGGTGAATACTGGAGAATAATAGAGAAACCAACAGCTGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGTTTTCCTAAGACATCATCCTTAACTAATAATGATTCAGATAGATATGCTGTGTCTGGCTGGAATCTGAATAACTTCCCGCGATTGCCAGGTTCTGCGTTATGTTTTGAAGGAAGTGATATCTCAGGAGTTCTAGTTCCATGGCTGTATATTGGAATGTGCTTTTCCTCATTTTGTTGGCATGTCGAGGACCATCATCTCTATTCACTTAATTATCTGCATTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAATCCATGCTCCAGGTTTGGAAGCTGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCGAATCTACTCAATGAATTGATAATATGTCCAATGGCTTGCACCGGTGCATATTGGGTTTGGGTTTGGGTTCAACCTGATAGCCTGTGCAATGACTTGAATATAGAAAGGCCTGCGTCTTATGTAGAGTGTTATATGTTAAAAGTTGTGCCTCTGCTAACAGCTAAGTCTTTTGGCATGGTTGTTACTCTCCTTCTCAAATCATTTGGAGTTACAGTCTACATGGGTTCAAAATTTGATATGGTGAGGTTGAACCTGGGGGCTTTAAATAGGGATAGAAAATGTGCAGTGTCTGATGAAGGATTTTATATGTCAAAAGTTTCACCTTTAATAATAGATCAAGCTTTCAGCACGGTGGTGACTCAGTTATCTCCTTCGATTCTTAAATCCGAGGGGGTGCCTGTACATCGCACTGTTCAGAATTCAGGTGAATTTGTTGTTACCTTTCCAAGGGCGTATCACTGTGGCTTCAATTGTGGCTTCAATTGCGCAGAGGCTGTGAATGTGGCTCCGGTTGATTGGCTTGTGCATGGCCAGAATGCTGTTGAGCTTTACAGTTTGCAGTGCCGTAAGACTTCATTGTCCCATGACAAATTATTATTTGGATGTGCTCAGGAAGCCGTGTGTGCCCTTGCAGAGGCAACTCTTCATGATAAAGAAAATCTAAAATATACAAAATGGAGTAGTGTTTGTGGGAAAGATGGAGTTCTTACCAAGGCAATTAAGACAAGGATAAATATGGAAAAGGAGAGGCTTGACTGTCTTCCCACTCATTTAAAGAAGCTTAGGATGAACAATGAGTTTGATTTGTTTGAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCCGCCATAGGTTGCAAGTGCTCCCCTGATACTTATTCATGTCTCAAGCACTCACATTTGTTTTGCTCATGTGAAGTGGACAAAAGCTTTGTTCTGTTTCGTTATACCATGAATGAACTAGGTACATTGGTTGAGGCATTAGAAGGAGAAGCACATGCTATTCTAGTGTGGGCAAATAGAAACACTGGACTGGTATCTGCTAATCCTGAGGATGCTTGCATCTATAAACAAGATGCGGAGAGTTACAAAGGATGGAAAAGCTCAACATATTGTGCAGGAACCAATAATAAGTCAAATTCAAATATACCTAGCAGTTCTTATAACCACATTTCTGCGGAGTTAGTGCACTCAGAGTTTCACCATGAAACTTATAGTGCACAATATGGGACTAAAGATTATCAGAAAGATATTAAGAATGAAGAAAAATTGGTCATGTACAATGAAGATAAGGTGAAGGAAGGTTCTCTGGATTTAAATATTGATGTTATGTTTGTTGAACGTGAAAATCGTTTTCTGCATGCTGCTGAATACCATCATAATAAGAGTGTTCCATATGTTGGAAAAGTATGCTATTCAGAGGTCAGAAAGAAACAAGACAACATGGAACCTGGGGCTGGATGTATAGCTTCCTTGGAGAAAGAATTTTCATCATGTTCAAGGGACGTTCAAAATTCTTGTACACTAGATGGTTATAAATTGTTTGGGGTGGACCTGCAGATGCATTCTGATTCGAGAGAACAACTCAACGGCGTATTTAAAATAGGTGATATTGAAACTTCCAACGCAAGTGTATCTTTGACAAACCAAAACTTCGTAATGAAGAATATTGGTGTTTCTGTTGAGCCTGTGAATTTGGGCATTGTTATGTGTGGTAAGTTGTGGTGCAGTAGGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTAAGCATTCTTGATCCACCAAGAATTTGTAACTATGTTTCTGAAGTCTATGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTACCATGGAAGAACATCCAAGTGAGATCTTCACAAACACCTCGGCAGATAAGTGCTGGGAGTCAGTTCTTTTGAGACTAAATCATGAAACCGAGAAGCTAAGGAATCAAGGTGAAAGAGAACTTCCTCCATTGGAGCTTCTGAAAAACATTAATGGTCATAAAATGTTTGGATTCCTTTCACCTTCCATTATTCAGGCTATTGAAGCTCTGGACCCCAATCATCAATGCGTCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAATCTTCAGAAAGTGGCATTGATGACTGTAAGCTCAGTCACGGTTCAAGTAACTCTCTAAGTGATGTCAAAACCAGACTTCTTGGTCCTGGTTTGAGAAAGCTGGAACAAGATAGCAGCAGAAGACATTATGATTCTTTTGAAGAGATGAAATTGGTGGTAGAAGGGTTATTGAAAAAGGCGAATGCTGAAGAATTAAGTGCCATGCACAAGTTATTCAGCTCTGATGCACAGTTCAACAAGTGGAGAGTGGCATATGTAACGCTGATTGAGGAAATCCAGAAAGCTTGTGCATAA 3513 0.4116 MLTPWWSATRFGGQPLGLVDSLLRHKPEMEITLESSASPQHKKVPARWDPVEACRPIIDEAPVFYPTIEEFEDTLGYLAKIRPQAEPYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKIRGRKRKRRKQSKMGAGRRTAKSGSEANVASEPEEKFGFQSGSDFTLKDFQQYAKVFKDCYFGLNDANEYGKVSDYNHWQKREPSVEDIEGEYWRIIEKPTAEVEVYYGADLETGSLGSGFPKTSSLTNNDSDRYAVSGWNLNNFPRLPGSALCFEGSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGIHAPGLEAAMRKHLPDLFEEQPNLLNELIICPMACTGAYWVWVWVQPDSLCNDLNIERPASYVECYMLKVVPLLTAKSFGMVVTLLLKSFGVTVYMGSKFDMVRLNLGALNRDRKCAVSDEGFYMSKVSPLIIDQAFSTVVTQLSPSILKSEGVPVHRTVQNSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSLQCRKTSLSHDKLLFGCAQEAVCALAEATLHDKENLKYTKWSSVCGKDGVLTKAIKTRINMEKERLDCLPTHLKKLRMNNEFDLFEERECFSCFYDLHLSAIGCKCSPDTYSCLKHSHLFCSCEVDKSFVLFRYTMNELGTLVEALEGEAHAILVWANRNTGLVSANPEDACIYKQDAESYKGWKSSTYCAGTNNKSNSNIPSSSYNHISAELVHSEFHHETYSAQYGTKDYQKDIKNEEKLVMYNEDKVKEGSLDLNIDVMFVERENRFLHAAEYHHNKSVPYVGKVCYSEVRKKQDNMEPGAGCIASLEKEFSSCSRDVQNSCTLDGYKLFGVDLQMHSDSREQLNGVFKIGDIETSNASVSLTNQNFVMKNIGVSVEPVNLGIVMCGKLWCSRHAIYPKGFKSRVKFLSILDPPRICNYVSEVYDAGFLGPLFKVTMEEHPSEIFTNTSADKCWESVLLRLNHETEKLRNQGERELPPLELLKNINGHKMFGFLSPSIIQAIEALDPNHQCVEYWNHKEVVSESSESGIDDCKLSHGSSNSLSDVKTRLLGPGLRKLEQDSSRRHYDSFEEMKLVVEGLLKKANAEELSAMHKLFSSDAQFNKWRVAYVTLIEEIQKACA 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03914 1170 SMART fyrn_3 932 976 IPR003888 GO:0005634
Vimu11g03914 1170 Pfam jmjN domain 62 95 IPR003349 -
Vimu11g03914 1170 ProSiteProfiles FYR domain FYRN motif profile. 918 976 IPR003888 GO:0005634
Vimu11g03914 1170 Pfam F/Y-rich N-terminus 929 973 IPR003888 GO:0005634
Vimu11g03914 1170 MobiDBLite consensus disorder prediction 133 151 - -
Vimu11g03914 1170 SMART fyrc_3 982 1077 IPR003889 GO:0005634
Vimu11g03914 1170 FunFam Putative lysine-specific demethylase JMJ16 924 1062 - -
Vimu11g03914 1170 PANTHER LYSINE-SPECIFIC DEMETHYLASE 56 902 - -
Vimu11g03914 1170 SMART JmjN_1 60 101 IPR003349 -
Vimu11g03914 1170 Pfam JmjC domain, hydroxylase 302 368 IPR003347 -
Vimu11g03914 1170 Pfam JmjC domain, hydroxylase 479 530 IPR003347 -
Vimu11g03914 1170 SUPERFAMILY Clavaminate synthase-like 488 568 - -
Vimu11g03914 1170 SUPERFAMILY Clavaminate synthase-like 265 378 - -
Vimu11g03914 1170 ProSiteProfiles FYR domain FYRC motif profile. 978 1068 IPR003889 GO:0005634
Vimu11g03914 1170 Pfam F/Y rich C-terminus 980 1067 IPR003889 GO:0005634
Vimu11g03914 1170 Pfam C5HC2 zinc finger 637 688 IPR004198 -
Vimu11g03914 1170 MobiDBLite consensus disorder prediction 131 169 - -
Vimu11g03914 1170 Gene3D Cupin 46 531 - -
Vimu11g03914 1170 Gene3D - 923 1062 - -
Vimu11g03914 1170 ProSiteProfiles JmjC domain profile. 269 547 IPR003347 -
Vimu11g03914 1170 SMART cupin_9 269 547 IPR003347 -
Vimu11g03914 1170 ProSiteProfiles JmjN domain profile. 61 102 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03914 Vimu-Chr11 61136498 61147284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03914 480 710 JUMONJI Transcription Factor Family AT1G30810 62.661 7.24e-88 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu11g03914 FYRC 3.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03914 K11446 - gmx:100784581 1124.77