Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03911 ATGGCTTTCTCTTGTCAATTATTTGTTCACTTTGGCTTATTGATTATCCTTCAGCTACACTTTCTCTTCCTTGGTGTATCAGCAGCCACTTTAAGCATCACCACTGACACAGAAGCCTTGATCTCATTCAAATCTCAACTGAGAAATGACACTCTTATTCCCTTATCTTCTTGGAACCAAAGTTCATCCCCTTGCAATTGGACTGGTGTCCAATGTGATACCCTTAACCAAAGGGTAATTTCCTTGGAACTTCCAAGCTTGGGACTCTCAGGTCAATTAAGTCCTTATATCTGTAACCTCTCCTCTCTTCAGTCCCTCCAATTGCAGGATAACCAACTCACTGGACTCATTCCTGATCAAATTGGCAGCCTATTCAGTTTGAGAGTTCTAAATATGAGCTTTAACATGTTAGAAGGAAAGCTTCCTTCTAACATCACCCTCTTGAATCAGCTCCAGATTCTTGATCTTTCCTCAAACAAGATCGTCAGCCAGATTCCTCAAGACATTGGCAGCTTGAAAAAGCTTGAGGTTTTGAAGCTGGGAAAGAATAGCCTCTATGGTGCAATCCCAGCTTCTCTAGGAAATATTTCTTCTCTCAAAAATATCAGTCTTGGCACCAACTTTCTCACTGGTTGGATTCCCAGTGACTTGGGTAGGCTTCATGATTTGATTGAGCTTGATCTCGTTCTTAACAATCTCAATGGGACTGTTCCACCTGCTGTGTATAACTTATCTTCCCTCGTTAACTTTGCCTTAGCTTCAAACTCTCTGTGGGGTGAGATTCCTCAGGATGTTGGTCTCAAACTTCCAAAACTCATAGTGTTCAACATCTGCTTCAATTATTTTACAGGTGGAATTCCAGGGTCTTTGCACAACCTCACCAACATTCAGGTCATTCGCATGGCTTCCAACCTTTTGGAAGGAACAGTGCCACCTGGTTTGGGAAATCTCCCATTTCTTCGCATGTATAATATTGGTGGTAACAGGATAGTGAGTTCAGGTGTCCGAGGTTTAGACTTCATTACTTCTTTGACAAACAGTACTCGACTCAAGTTTCTGGCAATTGATGGAAATATGCTGGAAGGTGTGATTCCTGAAACCGTTGGCAATCTCTCCAAGGACCTGTCAACGTTATACATGGGACAGAATCGTTTCAATGGAAGCATACCCCGCTCCATTGGTCTTCTTAGTGGCTTGAAGTTGTTAAATATAAGCCACAATTCAATCTCTGGAGAAATCCCACATGAGTTAGGCCAGTTAGCGGAACTACAAGAACTATCTCTAGCTGGAAATGAGATATCAGGGGTTATTCCAGATTCCCTTGGTAATCTCCTCAAGTTAAACCTGATTGATTTGTCAAGAAACAAACTTGTGGGGAGAATACCAACCAGTTTTGGGAATTTGCAAAGTCTGCTTTACATGGACTTATCAAGCAACCAACTCAATGGAAGCATTCCTGTGGAAATCCTCAATCTCCCAACTTTGAGCAATGTTTTGAACTTGTCAATGAACTCTTTGAGTGGACCAATACCTCAAATTGGAAGATTGAGTGGTGTTGCCTCCATTGACTTTTCTAGCAATCAATTGGATGGTGACATACCCAGTTCATTCAGCAATTGTCTCAGCTTGGAAAATTTGTTTTTGAACCGGAATCAGCTTTCAGGTTCCATTCCAAAGGCTCTGGGAGAAGTGAGAGCCTTGGAAACTTTGGACCTATCCACCAACCGACTCTCTGGAGCCATTCCTGTTGAACTTCAAAACTTACAGGTTCTTAGGTTCTTAAACCTCTCGTACAATGATTTAGAAGGAGCCATTCCAAGTGGTGGAGTTTTCCAAAATGTCTCTGCTGTACATTTAGAAGGCAATGAAAATCTCTGCTTGCAAGCCCCATGTGTAAATCGTGGGGAAGGAAGAAGAAAAGTGAGATATTACATCATCATAGCCGTTGCAGTAGCATTGGTACTGTGTCTCACAATTGGCTCAATACTATATATAAAGAGCAGAAAGGTAAAGGTAGCAACATTATCACCATCATCATCACCATCTGAACAGCTAAAACCTCTTGCACCAATGATCTCTTATGACGAGCTTCGTTTGGCAACTGAGGAATTCAACCAGGAAAACTTACTAGGAGTTGGGAGCTTTGGCTCAGTTTACAAAGGCAATCTAAGTCATGGAACTACTGTTGCAGTGAAAATTCTTGACACCCTAAGAACTGGTTTTCTAAAGAGTTTCTTTGCAGAATGTGAGGCTATGAAGAACTCGAGGCATCGAAATCTGGTTAAGCTCATCACATCATGCTCCAGTGTTGACTTCAAAAACAATGACTTTCGGGCTCTGGTGTATGAGTACATGTGCAATGGTAGCTTGGAAGATTGGATTAAGGGGAAGAGAAAGCATGCAGATGGAAACGGGTTGAACCTTATGGAGAGATTGAACATAGCAATAGATGTTGCGTGTGCACTGGACTACCTGCACAATGATAGTGAAATCCCAGTTGTGCACTGTGATTTGAAGCCTAGCAACATTCTCTTGAACGAAGACATGACTGCAAAGGTTGGAGACTTTGGATTGGCTAGGTTGCTTGTTCAAAGATCAACCAATCAAGTTTCCATTAGCTCCACTCATGCTCTTAGGGGCTCAATTGGTTACATACCTCCAGAATATGGATGGGGAGAGAAAGTAAGTGCAGCTGGAGATGTGTATAGTTTTGGTATAGTGTTGCTGGAGCTGTTCTCTGGGAAAAGTCCAACTGATGAATGCTTCACTGGAGGCCTAAGCATAAGAAGATGGATGCATTCAGCATTCAAAGAGAAGACAATGGAAGCCATTGACCCTGAGTTGGTGTCCCTCATTTTGCATGATGACCCTTCAGAGGGACCAAATAACGTACAAGTGTATTGTGTGGAAGCAATTGTAGGAGTAGCCATATCTTGCACTGCAGATAACCCAGATGAACGCATTGGCATCAGAGATGCTGTTAGCCAACTCAAATCTTCCAGAGACTCTCTTTTGAATAACTCGGATCATACTTCTGCTGCACATACCAACTCTTACTTAAAAGTTTTACTAAAATAA 3078 0.4204 MAFSCQLFVHFGLLIILQLHFLFLGVSAATLSITTDTEALISFKSQLRNDTLIPLSSWNQSSSPCNWTGVQCDTLNQRVISLELPSLGLSGQLSPYICNLSSLQSLQLQDNQLTGLIPDQIGSLFSLRVLNMSFNMLEGKLPSNITLLNQLQILDLSSNKIVSQIPQDIGSLKKLEVLKLGKNSLYGAIPASLGNISSLKNISLGTNFLTGWIPSDLGRLHDLIELDLVLNNLNGTVPPAVYNLSSLVNFALASNSLWGEIPQDVGLKLPKLIVFNICFNYFTGGIPGSLHNLTNIQVIRMASNLLEGTVPPGLGNLPFLRMYNIGGNRIVSSGVRGLDFITSLTNSTRLKFLAIDGNMLEGVIPETVGNLSKDLSTLYMGQNRFNGSIPRSIGLLSGLKLLNISHNSISGEIPHELGQLAELQELSLAGNEISGVIPDSLGNLLKLNLIDLSRNKLVGRIPTSFGNLQSLLYMDLSSNQLNGSIPVEILNLPTLSNVLNLSMNSLSGPIPQIGRLSGVASIDFSSNQLDGDIPSSFSNCLSLENLFLNRNQLSGSIPKALGEVRALETLDLSTNRLSGAIPVELQNLQVLRFLNLSYNDLEGAIPSGGVFQNVSAVHLEGNENLCLQAPCVNRGEGRRKVRYYIIIAVAVALVLCLTIGSILYIKSRKVKVATLSPSSSPSEQLKPLAPMISYDELRLATEEFNQENLLGVGSFGSVYKGNLSHGTTVAVKILDTLRTGFLKSFFAECEAMKNSRHRNLVKLITSCSSVDFKNNDFRALVYEYMCNGSLEDWIKGKRKHADGNGLNLMERLNIAIDVACALDYLHNDSEIPVVHCDLKPSNILLNEDMTAKVGDFGLARLLVQRSTNQVSISSTHALRGSIGYIPPEYGWGEKVSAAGDVYSFGIVLLELFSGKSPTDECFTGGLSIRRWMHSAFKEKTMEAIDPELVSLILHDDPSEGPNNVQVYCVEAIVGVAISCTADNPDERIGIRDAVSQLKSSRDSLLNNSDHTSAAHTNSYLKVLLK 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03911 1025 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 785 1010 - -
Vimu11g03911 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Vimu11g03911 1025 CDD STKc_IRAK 710 998 - -
Vimu11g03911 1025 ProSiteProfiles Protein kinase domain profile. 704 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03911 1025 SUPERFAMILY Protein kinase-like (PK-like) 680 997 IPR011009 -
Vimu11g03911 1025 FunFam LRR receptor-like serine/threonine-protein kinase EFR 676 784 - -
Vimu11g03911 1025 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 230 337 - -
Vimu11g03911 1025 Gene3D Phosphorylase Kinase; domain 1 665 784 - -
Vimu11g03911 1025 FunFam Receptor protein kinase CLAVATA1 32 190 - -
Vimu11g03911 1025 Gene3D Transferase(Phosphotransferase) domain 1 785 1020 - -
Vimu11g03911 1025 SUPERFAMILY L domain-like 346 626 - -
Vimu11g03911 1025 Gene3D Ribonuclease Inhibitor 26 87 IPR032675 -
Vimu11g03911 1025 Gene3D Ribonuclease Inhibitor 88 336 IPR032675 -
Vimu11g03911 1025 Gene3D Ribonuclease Inhibitor 337 633 IPR032675 -
Vimu11g03911 1025 ProSitePatterns Protein kinases ATP-binding region signature. 710 732 IPR017441 GO:0005524
Vimu11g03911 1025 PANTHER OS04G0122200 PROTEIN 218 998 - -
Vimu11g03911 1025 Pfam Protein kinase domain 705 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03911 1025 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Vimu11g03911 1025 SUPERFAMILY L domain-like 34 330 - -
Vimu11g03911 1025 SMART serkin_6 704 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03911 1025 SMART LRR_typ_2 293 317 IPR003591 -
Vimu11g03911 1025 SMART LRR_typ_2 148 172 IPR003591 -
Vimu11g03911 1025 SMART LRR_typ_2 588 613 IPR003591 -
Vimu11g03911 1025 SMART LRR_typ_2 564 587 IPR003591 -
Vimu11g03911 1025 SMART LRR_typ_2 100 123 IPR003591 -
Vimu11g03911 1025 SMART LRR_typ_2 468 492 IPR003591 -
Vimu11g03911 1025 SMART LRR_typ_2 420 443 IPR003591 -
Vimu11g03911 1025 SMART LRR_typ_2 124 147 IPR003591 -
Vimu11g03911 1025 FunFam Inactive leucine-rich repeat receptor-like protein kinase 342 633 - -
Vimu11g03911 1025 Pfam Leucine rich repeat 542 601 IPR001611 GO:0005515
Vimu11g03911 1025 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Vimu11g03911 1025 Pfam Leucine rich repeat 422 481 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03911 Vimu-Chr11 61123845 61127029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03911 35 1011 Receptor kinase-like Gene Family AT3G47570 42.685 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu11g03911 Pkinase 6.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03911 - - gmx:102664710 1625.53