Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03906 ATGGCCGGAATTTCTTCTCCCGCAATTAACATCTCTGAATTTCCATCCAATCTTAATGTCCTTGCCATTGATACTGATCTCAGAGTTTTTGAATTCATCAATAAATCATGCAAGGAGGATTCTCATCAAGTTATAATATGCACTGAATCTTCAAGTGCTGTGGATGTTTTGCTAAAAAAAGAAATAGACATTCATTTGATCATCATGGAGCTTCATATGCCAATGATGGATGGTTATGAATTCCTGCAATTTCTCAATAAAGAAGTAATTGATATTCCTTTTGCCGTGATGTCTGAGGATTATAGTTCGATTTCTATGACCAAGGCTTTCGATCTTGGAGCTTGCGATTATTTCAAGAAACCCTTCAATGATGACTATTGGTTAAATTTGTGGGGATCTATGTTCAAGCATCATATATACCTGAGGCGCAAAAAGAAAAATATTGATAGCTTGGATGATGATGAGATAATGGGGAAAAGTGATAATTCTGTTTGTTTCTGA 501 0.3533 MAGISSPAINISEFPSNLNVLAIDTDLRVFEFINKSCKEDSHQVIICTESSSAVDVLLKKEIDIHLIIMELHMPMMDGYEFLQFLNKEVIDIPFAVMSEDYSSISMTKAFDLGACDYFKKPFNDDYWLNLWGSMFKHHIYLRRKKKNIDSLDDDEIMGKSDNSVCF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03906 166 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 144 IPR045279 GO:0009736
Vimu11g03906 166 SMART REC_2 18 131 IPR001789 GO:0000160
Vimu11g03906 166 Pfam Response regulator receiver domain 20 125 IPR001789 GO:0000160
Vimu11g03906 166 Gene3D - 17 153 - -
Vimu11g03906 166 ProSiteProfiles Response regulatory domain profile. 19 135 IPR001789 GO:0000160
Vimu11g03906 166 SUPERFAMILY CheY-like 16 143 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03906 Vimu-Chr11 61090176 61091091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03906 11 142 Response Regulator Gene Family AT1G49190 31.061 1.11e-19 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g03906 Response_reg 2.1e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03906 - - vra:106769483 169.859