Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03897 AACTTTACACATATGGGGAAAAAGCTTGGTCCATGCTTCCATTGTGGAATTGATGTTACCCCACTTTGGCGTAATGGACCAGAAGACAAGCCAGTGTTGTGCAATGCATGTGGATCTAGATATAAGAAACGAGGAAGCCTTGGTCTTGAGGACTATCTGCCAAAGAATTTTCAACCTGAGTTTTTTGATAAATATAAATATAAAAAGGGTAGAAAAAAAATCTTCTTGTTTCAATCTATTTATGTTACAGATGCATACTTAGTTTGGAATGTATTTTTATCTATATTTCTGACAGTTGTTAGTAATTTTTGTCAGCTGAGAAAAGTGGACGTCTATGGAGTACTAAGATTCCTACAAAGAAACGTTCAGAAGTAG 375 0.352 NFTHMGKKLGPCFHCGIDVTPLWRNGPEDKPVLCNACGSRYKKRGSLGLEDYLPKNFQPEFFDKYKYKKGRKKIFLFQSIYVTDAYLVWNVFLSIFLTVVSNFCQLRKVDVYGVLRFLQRNVQK 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03897 124 ProSiteProfiles GATA-type zinc finger domain profile. 12 45 IPR000679 GO:0006355|GO:0043565
Vimu11g03897 124 Gene3D - 3 73 IPR013088 GO:0006355|GO:0008270
Vimu11g03897 124 SMART GATA_3 6 58 IPR000679 GO:0006355|GO:0043565
Vimu11g03897 124 Pfam GATA zinc finger 12 46 IPR000679 GO:0006355|GO:0043565
Vimu11g03897 124 CDD ZnF_GATA 11 45 IPR000679 GO:0006355|GO:0043565
Vimu11g03897 124 PANTHER OSJNBB0038F03.10 PROTEIN 6 67 IPR044589 -
Vimu11g03897 124 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 10 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03897 Vimu-Chr11 61008291 61008928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03897 5 60 C2C2-Gata Transcription Factor Family AT5G47140 60.714 9.51e-20 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu11g03897 GATA 2.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03897 - - gmx:102667887 101.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00338 2 1895622 1896166 Vimu11g03897 11 61008291 61008928 PCT