Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03882 ATGACAACAACGGTGGCACCGCCACCTTCGTTCAACCCTTCTCAAAACCAAGCATTAACATGGCGTCTCTCTCTGTTACCCCCAAACGCTGCGTTTTGCTCTCCGCATCTCATGAAGAAGAGCAAGAAGAAGAAGACAATGTCTTGGTCAATTTGTGCTCACTCCTTGCCTTTCGACCTCTCTCCTCCGCCCATCGATCATGACTTTCTGGATGCTGTCAAAACTGCAGGCGCAGAGGTTTCTGGGGATGGGATCATTGAGACGTTTCATAATGACGATGAAGCCCTGGATGCTGTGGAAAATGGGGTTGTGGTTGTTGATCTTTCACACTTTGGCCGGATAAGAGGGGACATATTAAATGACTCTAGCATAAGTGGAGAAGATCGCATTCAGTTCCTTCACAACCAGAGCACTGCAAACTTTGAATGTCTACATGAAGGACAAGGATGTGACACTGTTTTTGTGACACCAACAGCTCGAACAATAGATATTGCTCATGCATGGCTCATGAAAAATGCGATAACATTAGTGGTTTCTCCGGAGACCTGTATGACCATTATGGAAATGCTGAACAAGTACATATTTTTTGCTGATAAGGTGGAGATTCAAGACATAACTAAGCAAACCAGCTTTTTTGCTATGGTGGGACCCAACAGTGGCCAAGTGATGGAGAACTTGAACCTTGGTGATCTTGTTGGAAAACCATATGGTACACATCAACATTTTAATGTTGATAAGCAGCCTGTAACTGTAGGGGTTGGAAACATAATTTCAGAAGGTGGTTTTTCATTACTGATGTCTCCAGCTGCTGCTCCTTCTATTTGGAAAGCTATTCTTGCTCAAGGGGCTATCCCAATGGGTTCTAATGCATGGAATAAATTACGGATTATTCGAGGGAGGCCTGCCCCTGGAATGGAGCTTATAAATGAATTCAATGTGCTGGAGGCCTGTCTATGGAGCTCAATTTCTCTAAATAAAGGTTGTTATAAGGGACAGGAGACTATATCTAGGCTCATTACGTATGATGGAATCAAGCAGAGGTTATGGGGAATTCATCTTTCTGCTGCTGCAGAACCTGGCAGCATTATTACAGTGGATGGGAAAAAGGTCGGAAAGTTGACTAGCTACACTTCTGGAAGGAAGCAATCCGAACACTTTGGATTAGGTTACATAAAGAGGCGAGCTGCTTCGGAGGGAGACACTGTAATTGTAGGAGACAACATCAAGGGAACAGTCGTCGAACACAACTGGTCAATGGCACCAGTCTATCGTAAGAATTCATCTTTTGCTTCGTTTCTTTTTCTTGGATGTTGCCTCTTTTTCCAGGCATCAAATCCAAGCTCAGCAACGCCCTCTCCCTCTCCTTCTCCCACCATTTCCCCCACCAACAATTCTACGTGCCCAGTGCCCATGAATTATGTTCAAACAGTCCCTTGGAACATCTCTTCCTGCCAAAACTTCCAACCCCTGTCAACCCAAAACCAAACAAGCACAAGTTCTTGTTGCCAAACCCTCCTATCCCTCTTTGGGGTAGCACTTGCACAAAACCTCAAGGAAAACTCCCTTTTTCAACTACCCAATCTCCCTACATCTATCTCTTGCCTCCAACACTTCCAATCCAATCTCACATCCCTCTCACTTCCCAACAACCTTGTCTCCTCCTGCTTTGATCCACAACAATTTGTCATCACTCCCAATATCTGTGCTCGGATTCAAAACATGGAAGATTGGCTCGCCAGGCTTGGCTCTACACCACAGCTCGACACTGCGTGTAAACCAGACCTTAGTGATAGAAACCAATGCAGAGAGTGCGTGGCTGAGGGAGACAAGGTTCAGCAGAAGCTTAGTGCCATTGATGGTAATGAATCACATTCCCAAGATTGCTTTTACTTCACAGCACTTTACATGGCTGGAGTGGCCAATCAGTATGGCCCTGAGAGCAGAGGTGCTTTGTCTTGCGTTTTGATTTTGTTGCTTAATTCACAAGTTGATTCAAGGGATGGCCATCGTGCTCTTAGGTTTGGTTGGTTTGTATCTTCACTTGCAGTCCTGGTAATCGTGTTGTTAGGAGTAGGGTTGTATTTTTGGTATACCAAGAGAAGAAGTGTCGAAAATTTGCTTGCCTATGCTGATCTACAGGAAGAGAGGTTCAGGCTAAGGCTGAGACCAAATACAGTGTTAACTTGGTTTGAAATTGAGAGTCTTGTGAGGGCCACTAATAATTTTTCACCTAAGAATTTCATTGGTAGAGGTGGGTTTGGGATGGTTTACAAGGGCATTCTACCTGATGGCACAATGGTTGCGGTGAAAAGGCTTGAAGAATTCGATTCTCAAGGAGATACTCTGTTCTACAGTGAGGTTGAGATCGTTAGCAACTTGAAGCACCGTAATCTGGTGCCACTAATAGGGTGTTGTTTGGTAGATGAGGGTCACAATCTTGAGTACAGAGGAAGGTATCTAGTTCATGAATATATGCCAAATGGAAGTCTTCAAGACCATCTTTTTCCAACCAAATTAGAGAATCAATATACAACGAAATCCCTGACTTGGACTCAAAGAAAAAGCATAATCTTGGATGTGGCAAATGCATTGGTTTATTTGCACTTTGGAGTTAAACCTGCAGTGTATCACAGAGATATTAAAGCCACCAATATACTACTTGATGCAGATATGAGGGCGAGGGTTGGAGATTTTGGGCTAGTCAAACGGAGTAGTGAAAATTGGGTTTGGTCATTAATGAAATCTGGAAACATAGGAGAGGCTTTGGATGCTTCTATGTTTGGAGACGGAAATCATGCTACAAACATAATGGAGAGGTTTTTACTGGTTGGAATTCTTTCTTCTCATGTAGTTGTTGCTTCAAGGCCAACAATTTTGAATGCCTTGAAGATGTTAGAAGGGGATATTGAAATCCCACCAATTCCAGATAGGCCACTGATGCACGGGCACTAA 2952 0.4373 MTTTVAPPPSFNPSQNQALTWRLSLLPPNAAFCSPHLMKKSKKKKTMSWSICAHSLPFDLSPPPIDHDFLDAVKTAGAEVSGDGIIETFHNDDEALDAVENGVVVVDLSHFGRIRGDILNDSSISGEDRIQFLHNQSTANFECLHEGQGCDTVFVTPTARTIDIAHAWLMKNAITLVVSPETCMTIMEMLNKYIFFADKVEIQDITKQTSFFAMVGPNSGQVMENLNLGDLVGKPYGTHQHFNVDKQPVTVGVGNIISEGGFSLLMSPAAAPSIWKAILAQGAIPMGSNAWNKLRIIRGRPAPGMELINEFNVLEACLWSSISLNKGCYKGQETISRLITYDGIKQRLWGIHLSAAAEPGSIITVDGKKVGKLTSYTSGRKQSEHFGLGYIKRRAASEGDTVIVGDNIKGTVVEHNWSMAPVYRKNSSFASFLFLGCCLFFQASNPSSATPSPSPSPTISPTNNSTCPVPMNYVQTVPWNISSCQNFQPLSTQNQTSTSSCCQTLLSLFGVALAQNLKENSLFQLPNLPTSISCLQHFQSNLTSLSLPNNLVSSCFDPQQFVITPNICARIQNMEDWLARLGSTPQLDTACKPDLSDRNQCRECVAEGDKVQQKLSAIDGNESHSQDCFYFTALYMAGVANQYGPESRGALSCVLILLLNSQVDSRDGHRALRFGWFVSSLAVLVIVLLGVGLYFWYTKRRSVENLLAYADLQEERFRLRLRPNTVLTWFEIESLVRATNNFSPKNFIGRGGFGMVYKGILPDGTMVAVKRLEEFDSQGDTLFYSEVEIVSNLKHRNLVPLIGCCLVDEGHNLEYRGRYLVHEYMPNGSLQDHLFPTKLENQYTTKSLTWTQRKSIILDVANALVYLHFGVKPAVYHRDIKATNILLDADMRARVGDFGLVKRSSENWVWSLMKSGNIGEALDASMFGDGNHATNIMERFLLVGILSSHVVVASRPTILNALKMLEGDIEIPPIPDRPLMHGH 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03882 983 FunFam Receptor-like serine/threonine-protein kinase At4g25390 707 824 - -
Vimu11g03882 983 ProSitePatterns Protein kinases ATP-binding region signature. 748 770 IPR017441 GO:0005524
Vimu11g03882 983 SUPERFAMILY Aminomethyltransferase beta-barrel domain 355 426 IPR029043 -
Vimu11g03882 983 FunFam Slr0635 protein 80 418 - -
Vimu11g03882 983 NCBIfam folate-binding protein YgfZ 289 352 IPR017703 -
Vimu11g03882 983 Gene3D Probable tRNA modification gtpase trme; domain 1 86 417 IPR027266 GO:0005515
Vimu11g03882 983 ProSiteProfiles Protein kinase domain profile. 742 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03882 983 Pfam Protein kinase domain 745 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03882 983 Gene3D Phosphorylase Kinase; domain 1 708 824 - -
Vimu11g03882 983 Gene3D Transferase(Phosphotransferase) domain 1 825 907 - -
Vimu11g03882 983 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 476 905 - -
Vimu11g03882 983 SUPERFAMILY Protein kinase-like (PK-like) 723 910 IPR011009 -
Vimu11g03882 983 SMART serkin_6 742 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03882 983 Pfam Aminomethyltransferase folate-binding domain 94 318 IPR006222 -
Vimu11g03882 983 Pfam SPARK 463 629 IPR043891 -
Vimu11g03882 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 875 887 IPR008271 GO:0004672|GO:0006468
Vimu11g03882 983 SUPERFAMILY Folate-binding domain 89 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03882 Vimu-Chr11 60859716 60869875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03882 907 983 Receptor kinase-like Gene Family AT1G11050 60.494 1.22e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vimu11g03882 GCV_T 2.4e-26 CL0289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03882 - - vra:106765729 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03882 11 60859716 60869875 Vimu11g03882 11 60859716 60869875 ECH