Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03880 ATGGAGAAATACGAGTTGGTAGAAGAGAACGTAGGGAATGGAAAAGTAGCAGTGGTGAAACTCATGCGTCACAGAGAGACCAAAGAACATGTTGCTGTAAAGTTCATCCCACGGGACCTTACGATTGATGAAACGGTGTCAAGAGAAATCATAAACCATAGATCTCTTCGTCATCCCAATATTGTCCAGTTCAAAGAGGTAGCTCTGACTTCAACACATCTTGCATTAGTTATGGAGTATGCAGCTGGTGGAGAATTGTTTTACCAAGTTCTTCACCAAGGAAGAATCAAAGAAGACAAAGCTAGATATTTCTTCCAGCAGTTGATTGCAGGAGTTAGTTACTGTCACGACATGGAAATATGTCATCGAGACTTGAAGTTGGAGAATACCTTGTTAGATGGAAGTCCTGCAAATCGTCTTAAAATTTGTGATTTTGGCTATTCTAAGTCAAATGTACTTCATTCGAGGACTCATTCAAGGGTAGGAACTCCAGCCTATATTGCACCAGAGATCATTACTGGAAAAGATTATGATGGAAAGTTGGCAGATGTATGGTCCTGTGGAGTAATTCTTTATACAATGCTTGTAGGAACATTGCCATTTGAGGACAAAAGTGATCGTCAAAATCTCAAAAAAATGGTTCAGAGAGTTTCGGCTGTTCAATACGAGTTCCCCGACAATGTTTTAAGCGAAGACAGCAAAAATCTGATATCTCGTATTTTTGTGGCAAATCCATCAAAGAGAATCACCATGAAGGAAATCAAGTCACATCCATGGTTTTTGAAGAACTTGCCTGAGGAGTTAAAAGAAGGGGCTCAATATGTCCACCAGAATGAAGAAAATACAAAATATTGTGTTCAAAGTATAGAAGAAATCATGAACATTGTGAACGAAGCAAAAACCAGAGCTGATGCTTGCAGTCCAAATCTATAG 933 0.3912 MEKYELVEENVGNGKVAVVKLMRHRETKEHVAVKFIPRDLTIDETVSREIINHRSLRHPNIVQFKEVALTSTHLALVMEYAAGGELFYQVLHQGRIKEDKARYFFQQLIAGVSYCHDMEICHRDLKLENTLLDGSPANRLKICDFGYSKSNVLHSRTHSRVGTPAYIAPEIITGKDYDGKLADVWSCGVILYTMLVGTLPFEDKSDRQNLKKMVQRVSAVQYEFPDNVLSEDSKNLISRIFVANPSKRITMKEIKSHPWFLKNLPEELKEGAQYVHQNEENTKYCVQSIEEIMNIVNEAKTRADACSPNL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03880 310 ProSiteProfiles Protein kinase domain profile. 5 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03880 310 SMART serkin_6 5 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03880 310 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Vimu11g03880 310 Pfam Protein kinase domain 8 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03880 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Vimu11g03880 310 FunFam Serine/threonine-protein kinase SRK2A 81 268 - -
Vimu11g03880 310 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Vimu11g03880 310 SUPERFAMILY Protein kinase-like (PK-like) 8 282 IPR011009 -
Vimu11g03880 310 PANTHER SERINE/THREONINE KINASE 2 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03880 Vimu-Chr11 60843712 60847105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03880 3 269 CBL-interacting serine-threonine protein kinases AT5G25110 43.478 4.93e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vimu11g03880 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03880 K14498 - gmx:100787825 474.552