Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03873 ATGGATTCTCATGGCACTTCCCAAGGCTATCAACACAAGGAGCATGAAGGCCATCGTGAGGCGGTTTTCTTACATGGTGACTTGGATCTGTTGATAATTGAAGCCAAGTCTCTTCCAAATTTAGATTTATCTTCTGAAGCAGTTAGAAAATGTGTGACTTTGGGCAACGTGTGCCATCCTCCATTTATGAAAGGACTAAAGTCACACGGTGGAAAAGATAAGATGATAACAAGTGACCCTTATGTTTCAGTATGCATAGCTGGGGCAACCGTTGCTCGAACTAGAGTGATTCCTAACTGTGAGAACCCTTGCTGGGATGAGCAATTTATTGTGCCTGTTGCTCATCCTGCTCATAAAGTGGAGTTTCTTGTGAAGGATAATGATATTCTGGGGGCTGAACTCATTGGAGTGGTGGAGATACCTGTTTACAAGATAATTTCTGGTAATGCTATCAATGATTGGTTTCCCATCATTGGTCAGTATGGAAGCTGCTTAAAACCTTATCCTGAACTGCATCTTTCTGTTCAATATAAGCCAATTGCAGTGAACCGTACACAAAAAGTAATGAATGAGGATGGGACAGCATACTTAGGAGTTTCTAAAACCTATTTCCCTCTCAGGAAAGGAGGGAGTGTGACTCTGTATCAAGATGCACATATACCAGATGGTATGATACCTGAAATCCCACTTGAGGGTGGAAAAGTGTTTCAGCAAAATAAATGTTGGGAAGACATATGTCATGCAATTTTGGAAGCTCATCACATGATATACATTATAGGATGGTCAGTTTACCACCCAGTTAGGCTTATCAGAGAGGCAACAAAGCCAGTACCTTCAGGGGGAGAGCTTTCACTTGGAGAGCTGTTGAAGTACAAGTCACAAGAAGGACTCCGAGTGGTTATGCTGATTTGGGACGACAGAACTTCACATGACAAGTTTCTTCTGAAAACAGATGGTGTCATGCAGACTCATGATGAGGAAACTAAGAAGTTTTTCAAACATTCCACTGTTCATTGTGTGCTATCTCCACGTTATGCAAGCAATAAGCTCAGTATTTTCAAGCAACAGGCGTGGAGTTGTTGCATTGAATCTAGTAGTGTTGTGGGAACCCTCTTCACACATCACCAGAAATGTGTGCTTGTAGACAGTCTTGGTTCTGGGAATAATCGGAAAATAACTGCTTTTATTGGTGGTTTGGATCTATGTGATGGTAGATATGATACCCCTGAGCATCGGCTTTTTCGTGATATAGATACGGTTTTTCATAATGATTTTCACAACCCTTCTTTTCAACAACTAAGTTCGAATTCGTGTGCTCCAAGGCAACCATGGCATGACTTACATTGTAAAATTGAAGGTCCAGCAGCATATGATATATTAACCAATTTTGAACAAAGATGGAGGAAGGCCAAAAAATGGCGTGACTTCAGGCTCAAAAAGGTGACAAACTGGCATGATGATGCTTTGCTTCGGCTGGATCGAATTTCATGGATTGTCAAACCTGCTCCTAGCCCCAATGGTGAAAAAGCTGTATATGTAACCGATGAAAATGATCCTGAAAGTTGGAATGTGCAGGTGTTTAGGTCCATAGATTCTGGATCTGTAAAGGGCTTTCCAAAGGATGTTTTCAAAGCTAAGGCTCAGAATCTTTTGTGTGGAAAAAATTTGAAAGTTGATCAAAGCATCCATACTGCTTATGTAAGAGCAATAAGATCTGCCGAGCACTTTATATATATTGAGAATCAGTATTTTCTGGGCTCCTCATTTCACTGGCCTTCATATAAAAATAAAGCTGGTGCAAACCACTTGGTTCCCATGGAGTTGGCTTTGAAAATTGCTGGTAAGATCAGTGTAAATGAACGTTTTTCTGTATATATAGTTATACCAATGTGGCCAGAGGGTGTTCCAACAAGTGCTGCTGTTCAAGAAATCTTGTTCTGGCAGGGACAGACAATGTCTATGATGTACAAGATTATTGCTGATGCCCTTGCAAAAGCAGGTCTCTCTGATAAGTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGGAAAAGAGAACCCCCAAGCTCAAATGTTTCTTCAACGTCAAGTCCATCTGAAAACCGCGCTTTGGTAAGCTAA 2124 0.4091 MDSHGTSQGYQHKEHEGHREAVFLHGDLDLLIIEAKSLPNLDLSSEAVRKCVTLGNVCHPPFMKGLKSHGGKDKMITSDPYVSVCIAGATVARTRVIPNCENPCWDEQFIVPVAHPAHKVEFLVKDNDILGAELIGVVEIPVYKIISGNAINDWFPIIGQYGSCLKPYPELHLSVQYKPIAVNRTQKVMNEDGTAYLGVSKTYFPLRKGGSVTLYQDAHIPDGMIPEIPLEGGKVFQQNKCWEDICHAILEAHHMIYIIGWSVYHPVRLIREATKPVPSGGELSLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQAWSCCIESSSVVGTLFTHHQKCVLVDSLGSGNNRKITAFIGGLDLCDGRYDTPEHRLFRDIDTVFHNDFHNPSFQQLSSNSCAPRQPWHDLHCKIEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALLRLDRISWIVKPAPSPNGEKAVYVTDENDPESWNVQVFRSIDSGSVKGFPKDVFKAKAQNLLCGKNLKVDQSIHTAYVRAIRSAEHFIYIENQYFLGSSFHWPSYKNKAGANHLVPMELALKIAGKISVNERFSVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIIADALAKAGLSDKYHPQDYLNFYCLGKREPPSSNVSSTSSPSENRALVS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03873 707 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 370 405 IPR001736 GO:0003824
Vimu11g03873 707 ProSiteProfiles C2 domain profile. 3 155 IPR000008 -
Vimu11g03873 707 Pfam C2 domain 26 157 IPR000008 -
Vimu11g03873 707 Gene3D C2 domain 22 178 IPR035892 -
Vimu11g03873 707 PANTHER PHOSPHOLIPASE D 19 692 IPR015679 -
Vimu11g03873 707 Gene3D Endonuclease Chain A 529 685 - -
Vimu11g03873 707 Gene3D Endonuclease Chain A 232 489 - -
Vimu11g03873 707 SUPERFAMILY Phospholipase D/nuclease 202 475 - -
Vimu11g03873 707 CDD C2_plant_PLD 21 177 - -
Vimu11g03873 707 SUPERFAMILY Phospholipase D/nuclease 560 658 - -
Vimu11g03873 707 SMART C2_3c 27 154 IPR000008 -
Vimu11g03873 707 PIRSF PLD_plant 12 707 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vimu11g03873 707 FunFam Phospholipase D delta 232 488 - -
Vimu11g03873 707 Pfam Phospholipase D Active site motif 371 405 IPR001736 GO:0003824
Vimu11g03873 707 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 24 179 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03873 Vimu-Chr11 60804415 60808933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03873 20 697 Phospholipase D Gene Family (Wang group) AT4G35790 56.899 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03873 K01115 - gmx:100810824 1281.54