Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03872 ATGGCACCTGATGATCTGGATTATATAGTAGCAGTTAAAAAATTCAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGACGATTACGTGATTATTGGATCGGCAAATATCAACCAGAGATCATTAGATGGTTCTAGGGACACAGAAATAGCTATGGGAGCTTATCAACCAAAATATACATGGACAGAAAGCAGACCCCATCCACGTGGCCAGGTGTATGGATACAGAATGTCACTGTGGGCTGAGCACCTTGGTAGCCTTGACCATGTTTTTGGTGAACCTCAGACCCTGGAATGTGTTAGACAAGTGAACAAAATTGCAAAACAAAACTGGGGCATATATGTGTCCGAAGAAGGGAGATACATGAGGGGACATTTAATGCAGTATCCCGTTAAGATCAGCAGGGATGGAAAAGTGAGTGCATTAGATGATTATGAGTCTTTTCCTGATGTTGGTGGCAAAGTTCTTGGATCACCAAACTCACTTCCGGATCAACTAACCACCTGA 519 0.4181 MAPDDLDYIVAVKKFRRFMIYVHAKGMIVDDDYVIIGSANINQRSLDGSRDTEIAMGAYQPKYTWTESRPHPRGQVYGYRMSLWAEHLGSLDHVFGEPQTLECVRQVNKIAKQNWGIYVSEEGRYMRGHLMQYPVKISRDGKVSALDDYESFPDVGGKVLGSPNSLPDQLTT 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03872 172 SMART pld_4 18 45 IPR001736 GO:0003824
Vimu11g03872 172 Pfam Phospholipase D C terminal 92 162 IPR024632 -
Vimu11g03872 172 PANTHER PHOSPHOLIPASE D 13 161 IPR015679 -
Vimu11g03872 172 Gene3D Endonuclease Chain A 6 73 - -
Vimu11g03872 172 SUPERFAMILY Phospholipase D/nuclease 14 90 - -
Vimu11g03872 172 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 18 45 IPR001736 GO:0003824
Vimu11g03872 172 Pfam Phospholipase D Active site motif 19 45 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03872 Vimu-Chr11 60799237 60800379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03872 12 171 Phospholipase D Gene Family (Wang group) AT4G00240 61.875 1.81e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03872 K01115 - pvu:PHAVU_002G2487001 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03872 11 60799237 60800379 Vimu11g03872 11 60799237 60800379 ECH