Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03871 ATGGGTAAGTCCTCTTTCTCCTTCCGCCGCTCCGTCTCTCGCCGCCGGACCAAGAAGACCACAGCGCCACCCCCTCGCCGGTCCCCGCCACAGCCTCCCTACGCCGCTGGGATCACCGCTTCGCCGGATGGAGCCGCAAACAATGGCCTCGTCGCAGGTGCAGGTGCCATCGCGTTGACAAAGGTGAAGAAGAAGACCGGCAGCGCTCGGCTCTGGATGAGGTTCGACCGGTCCGGTAGGTCCGAGCTCGTGGAGTGGGAGAAGAACGCCATCGTCCACCATGCCGCGATTCCCGCTCGAGACCTGAGAATCCTTGGCCCCGTCTTCTCTCACTCCTCGAACATCCTCGCTAGAGAGAAAGCAATGGTTGTTAATTTGGAGTTTATAAAGGCTATAGTGACTGCTGAAGAAGTGCTACTGCTTGATCCTCTTCGGCAGGAGGTTCTTCCCTTTGTTGAGCAACTCAGGCAGCAGCTTCCGGGCAAGTCTCAACCGAAACTTCTCGGCTCCGTGGAGGAGCAGGAAGGTGAATTGCTGGGTTCTAATGGCAGACAATGGTTGCCTACGCTGGAGACGGTTGAAGGTTTGCAGTCTGAACTTCCGTTTGAGTTTCAAGTTCTGGAAATTGCTTTGGAGGCTGTGTGTACTTATCTGGACTCCAGTGTAGCAGACCTGGAGCGAGGTGCTTACCCTGTGTTGGACGAATTGGCTAGGAATGTTAGTACCAAAAATCTTGAACATGTGAGGAGTTTGAAGAGTAATCTCACGCGTTTGCTGGCACGAGTGCAGAAGGTACGGGATGAAATTGAACATTTGTTAGATGACAACGAAGATATGGCACAACTATATTTGACAAGGAAGTGGCTGCTGAATCAACAAATTGAGGAGGCTCAATTGGGTGCCACAACCTCAAATAACCTTCCTAATTCCGCCCGTTCTGTTCGACGCCTTGGTTCTACCAGAAGTGAAAGTCTTGCAACCAGCCATTATGGGGAAGATAATGATGTGGAGGACCTGGAGATGTTGCTTGATGCATATTTCATGCAGTTAGATGGAACTCGTAACAAGATATTATCTGTGAGGGAGTATATTGACGACACCGAAGACTATGTCAACATCCAACTCGATAACCATCGAAATGAACTTATTCAGCTGCAGTTGACATTGACTATTGCATCATTTGCTATTGCTATTGATACTTTGGTTGCGGGTACATTTGGTATGAACATTCCTTGTAAATTGTATAATATAGATGGAATATTTTGGCCCTTTGTTTGGATCTCGTCTGCAGCTTGTGTACTCCTTTTCTTGCTTATTTTAGCATATGCAAGATGGAAAAAGTTGTTGGGATCATAA 1356 0.4875 MGKSSFSFRRSVSRRRTKKTTAPPPRRSPPQPPYAAGITASPDGAANNGLVAGAGAIALTKVKKKTGSARLWMRFDRSGRSELVEWEKNAIVHHAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVLPFVEQLRQQLPGKSQPKLLGSVEEQEGELLGSNGRQWLPTLETVEGLQSELPFEFQVLEIALEAVCTYLDSSVADLERGAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAQLYLTRKWLLNQQIEEAQLGATTSNNLPNSARSVRRLGSTRSESLATSHYGEDNDVEDLEMLLDAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNHRNELIQLQLTLTIASFAIAIDTLVAGTFGMNIPCKLYNIDGIFWPFVWISSAACVLLFLLILAYARWKKLLGS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03871 451 CDD Mrs2_Mfm1p-like 72 448 IPR039204 -
Vimu11g03871 451 Pfam CorA-like Mg2+ transporter protein 330 444 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vimu11g03871 451 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 387 439 IPR045863 -
Vimu11g03871 451 FunFam Magnesium transporter MRS2-1 60 143 - -
Vimu11g03871 451 Coils Coil 248 282 - -
Vimu11g03871 451 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 35 449 IPR039204 -
Vimu11g03871 451 Gene3D - 56 143 - -
Vimu11g03871 451 Gene3D Magnesium transport protein CorA, transmembrane region 145 382 - -
Vimu11g03871 451 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03871 Vimu-Chr11 60791156 60793870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03871 1 451 MRS2 Gene Family AT3G58970 64.176 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03871 K16075 - gmx:100812561 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03871 11 60791156 60793870 Vimu6g01558 6 14566252 14568182 PCT