Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03868 ATGGAGATTCACTACAGTAGCAGCTACTTCGAAAGACGTCCCATTCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTTAAAGAATGGGTTCCCCAAGATCTTGTAACAACTGGAGGAAAATGCATGCTCTTAAAATGGGTAACAGAGGATACCTTGAAGACCTTGAAAGAAAAGACAACAGAGCCAACAATGCCTGAGCCAGAACCAGAGCCAACTACTGAAGTGCTTTTTCTTTGTAGCTATGATGGATGTGGAAAGACATTCATAGATGCTGGTGCATTGCGGAAGCATTCTCACATCCATGGAGAGAGGCAATATGTCTGTCACTACGAGGGGTGTGGAAAGAAATTTCTGGATAGCTCAAAATTGAAAAGACATTTTCTCATTCATACAGGGGAAAGGGATTTTGTGTGTCCTCATGAAGGTTGTGGTAAGGCCTTTTCCTTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCCCAAGAGAACTATCATATCTGCCCGTACCCAGATTGTGGAAAGAGATATGCTCACGAATACAAACTAAAGAATCACATTGCATCTCATCATGAAAAGGTTGGTAGATTGCTATTGTTTGGTCATAGTTTATTAATATCACATGCTTCATGTTATCATAATGCATCAGTGGATGTGACAAAGTACACTACTCCACCTTCAGAGAAGCAAACAAAAACTGCTAAATCGTCTGGAGGGGCATATGGTTCTGCATCATCCGACCGTCCCTATGCATGTCCGTATGATGGGTGTGAAAAGGCATATATCCATGAATACAAGCTTAGACTTCATTTGAAGAGGGAACACCCGGGGCTTATGCCTGATGAAAATGCTGAGCATGCTCAGGCTAATAATGTTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATGTCGCGAAACGGTCAAATGGTAAAATTCAGAAACAGAGTAGGCCTAAACCAAGTCTTAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGTGTCCACTCCCACTATAACTGTAAATAAAAATTCTTGGCCCGTGAAAGATGAGCCTTTTGATGAAGAAGATAGTGAGGAAACAGAAGAAGATCGTGACAATGTTGAAGATGGTTGGAGATATACTGGAGGAAACAATGAAGATGACGATGAAGAAACAGAATATGAAGACTGA 1179 0.4139 MEIHYSSSYFERRPILKSKAPAVKWVKEWVPQDLVTTGGKCMLLKWVTEDTLKTLKEKTTEPTMPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKVGRLLLFGHSLLISHASCYHNASVDVTKYTTPPSEKQTKTAKSSGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGLMPDENAEHAQANNVDNEMDEASDQDAYVAKRSNGKIQKQSRPKPSLKLPPSKIAKRKVSTPTITVNKNSWPVKDEPFDEEDSEETEEDRDNVEDGWRYTGGNNEDDDEETEYED 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03868 392 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Vimu11g03868 392 FunFam Zinc finger transcription factor YY1 225 293 - -
Vimu11g03868 392 ProSitePatterns Zinc finger C2H2 type domain signature. 252 275 IPR013087 -
Vimu11g03868 392 FunFam zinc finger transcription factor YY1 77 102 - -
Vimu11g03868 392 Gene3D Classic Zinc Finger 77 102 - -
Vimu11g03868 392 Gene3D Classic Zinc Finger 134 161 - -
Vimu11g03868 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Vimu11g03868 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Vimu11g03868 392 SMART c2h2final6 136 160 IPR013087 -
Vimu11g03868 392 SMART c2h2final6 77 101 IPR013087 -
Vimu11g03868 392 SMART c2h2final6 166 190 IPR013087 -
Vimu11g03868 392 SMART c2h2final6 250 275 IPR013087 -
Vimu11g03868 392 SMART c2h2final6 106 130 IPR013087 -
Vimu11g03868 392 FunFam Putative zinc finger protein 143 103 133 - -
Vimu11g03868 392 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 366 - -
Vimu11g03868 392 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Vimu11g03868 392 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Vimu11g03868 392 Gene3D Classic Zinc Finger 224 293 - -
Vimu11g03868 392 FunFam zinc finger transcription factor YY1 163 194 - -
Vimu11g03868 392 FunFam Zinc finger protein 410 134 161 - -
Vimu11g03868 392 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Vimu11g03868 392 MobiDBLite consensus disorder prediction 222 243 - -
Vimu11g03868 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 280 IPR013087 -
Vimu11g03868 392 MobiDBLite consensus disorder prediction 295 392 - -
Vimu11g03868 392 Gene3D Classic Zinc Finger 103 133 - -
Vimu11g03868 392 Gene3D Classic Zinc Finger 163 194 - -
Vimu11g03868 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 190 IPR013087 -
Vimu11g03868 392 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Vimu11g03868 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Vimu11g03868 392 MobiDBLite consensus disorder prediction 222 247 - -
Vimu11g03868 392 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Vimu11g03868 392 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Vimu11g03868 392 MobiDBLite consensus disorder prediction 354 368 - -
Vimu11g03868 392 SUPERFAMILY beta-beta-alpha zinc fingers 245 273 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03868 10 376 C2H2 Transcription Factor Family AT4G06634 62.078 1.95e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu11g03868 zf-C2H2 0.0095 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03868 - - gmx:100811480 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03868 11 60759413 60763228 Vimu11g03868 11 60759413 60763228 ECH