Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03863 ATGAAACCTACCCCAACAGGGGGAGAGTGCAGGCAGAGCCATGATCTAATTAGAAGAGATGAAAAAGGAAAAGAAAAGGTGAGAGACAGAGACAACCACGGCTTCATTCTCTTAAAATGGAAACGTGTGAGTGATGAGAGAATGGAGGATGAATCCAAAAATAAGAATAAAGAAATTCTGTTATTGATTTCGTGGTTATTATTTTCCCTCGCTCGCTCTGCTTCCTTCTATTCGGTTCGTATACTTTCCAATACCGTAATCAAAGCTGCAGAAGCTTTTGTCGTGCGGAATCCTTCGGCGGCGGCCATGGAAAACATTGCCGCGCAGCTGAAGCGCGGCATCTCGCGGCAGTTGTCGTCGGGGTCGCTGCGGAAGAGCCTGAGCCGGCAGTTCACGCGCCAGGCCTCGCTCGATCCACGCCGGAACAACCAGCGGTTCAGCTTCGGGCGGCAGTCGTCGTTGGATCCGATACGGAGGAGCCCCGAACACGACCAGGCGGAGCTTACCGTGCCCGAGAACCTTGACTCCACCATGCAGCTGCTCTTCATGGCGTGCCGAGGCGATGTCAAGGGGGTTGAGGATTTGCTCAACGAAGGCATCGACGTCAACAGTATCGACCTCGATGGCCGCACTGCCCTCCACATCGCCGCCTGCGAAGGCCATGCCGAAGTCGCTCGGCTCCTCCTCACCCGCAAGGCCAACATCGACGCTCGCGATCGCTGGGGCAGTACCGCGGCGGCCGATGCCAAATATTATGGAAATACAGAGATTTATTACATGTTGAAGGCTCGTGGAGCGAAAGTGCCGAAAACCAGGAAGACTCCAATGACTGTTGCGAATCCTCGTGAAGTTCCGGAATATGAACTCAACCCGTTAGAGCTACAGGTTCGGAAGAGCGACGGTATTTCAAAAGGAACATATCAAGTAGCTAAATGGAATGGCACAAAGGTTGCAGTGAAGATACTTGACAAGGACAGTTATACAGATCCTGATACCATGTTGTTTAATGTTGTTTGGCTAAGTTCCTGTCTGACTGCATATGTCACTACTTTTCACTTTGAGTTCTGGTCTCGTAGATGGCCCGAACTGGTAAATGCTTTCAAACATGAGCTCACATTATTAGAAAGGGTGCGACATCCCAATCTGGTCCAGTTTGTTGGAGCTGTAACCCAAAATGTACCTATGATGATCGTGCGTGAGTACCATGCTAAGGGTGATCTGGCAAGCTATCTACAAAAGAAAGGGCGTTTGTCCCCATCAAAAGTTCTACGTTTTGCTCTAGATGTTGCTAGGCAACTTTCTAAGTTTACAGTGGGCATGAACTATCTTCATGAATGCAAACCAGAACCGATTATTCACTGTGATTTAAAGCCAAAAAATATTTTGCTCGATAATGGAGGGCAATTGAAGATAGGTGGATTTGGCACTGCGAGATTTTCTCTCATCTCAGCTGATCAAGCAAAGCTGGTGCAGCCTGATCCTAACATTGATCTTTCAAGCTTGTATGTGGCACCAGAGATTTACAAAGATGAAGTATTTGATAGAAGTGTGGATGCATATTCTTTTGGTCTCATTATATATGAGACTTTTTTAGAGCTGAGATCACGAGTTGATGCTCAGAAGGATGTTAGAGGGTACGCCTCCCTTCCATCACAAGCCCTCGGAGGAGGTAGTGCAACTAATGTGCTTAGAGGGGAAAAGACCGACAATCAAGATCAAAACAAAACATTATCCTCCGGATTTGAAAGAGTTAGTCTGTTGATTGAGGAATGTTGGGATCCAACTCCTGTAGTCAGGCCAACATTTTCTCAGGTCATTGTACGGTTGAACAAAATTGTTGCAACTTGCTCAAAACAAGGATGGTGGAAAGATACTTTTAAGCTTCCTTGGTATGTTTTCGAGATTGATTATATCCCT 1917 0.4705 MKPTPTGGECRQSHDLIRRDEKGKEKVRDRDNHGFILLKWKRVSDERMEDESKNKNKEILLLISWLLFSLARSASFYSVRILSNTVIKAAEAFVVRNPSAAAMENIAAQLKRGISRQLSSGSLRKSLSRQFTRQASLDPRRNNQRFSFGRQSSLDPIRRSPEHDQAELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHAEVARLLLTRKANIDARDRWGSTAAADAKYYGNTEIYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQVAKWNGTKVAVKILDKDSYTDPDTMLFNVVWLSSCLTAYVTTFHFEFWSRRWPELVNAFKHELTLLERVRHPNLVQFVGAVTQNVPMMIVREYHAKGDLASYLQKKGRLSPSKVLRFALDVARQLSKFTVGMNYLHECKPEPIIHCDLKPKNILLDNGGQLKIGGFGTARFSLISADQAKLVQPDPNIDLSSLYVAPEIYKDEVFDRSVDAYSFGLIIYETFLELRSRVDAQKDVRGYASLPSQALGGGSATNVLRGEKTDNQDQNKTLSSGFERVSLLIEECWDPTPVVRPTFSQVIVRLNKIVATCSKQGWWKDTFKLPWYVFEIDYIP 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03863 639 ProSiteProfiles Ankyrin repeat profile. 208 240 IPR002110 GO:0005515
Vimu11g03863 639 FunFam Integrin-linked protein kinase 1 149 287 - -
Vimu11g03863 639 Pfam Protein tyrosine and serine/threonine kinase 365 608 IPR001245 GO:0004672|GO:0006468
Vimu11g03863 639 SUPERFAMILY Protein kinase-like (PK-like) 306 609 IPR011009 -
Vimu11g03863 639 SMART serkin_6 296 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03863 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Vimu11g03863 639 SMART ANK_2a 176 204 IPR002110 GO:0005515
Vimu11g03863 639 SMART ANK_2a 208 237 IPR002110 GO:0005515
Vimu11g03863 639 Gene3D - 133 287 IPR036770 -
Vimu11g03863 639 Pfam Ankyrin repeats (many copies) 195 245 IPR002110 GO:0005515
Vimu11g03863 639 FunFam serine/threonine-protein kinase STY46-like 354 403 - -
Vimu11g03863 639 PIRSF ILK 110 336 - -
Vimu11g03863 639 PIRSF ILK 349 630 - -
Vimu11g03863 639 SUPERFAMILY Ankyrin repeat 177 277 IPR036770 -
Vimu11g03863 639 ProSiteProfiles Protein kinase domain profile. 292 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03863 639 MobiDBLite consensus disorder prediction 142 165 - -
Vimu11g03863 639 Gene3D Phosphorylase Kinase; domain 1 290 402 - -
Vimu11g03863 639 MobiDBLite consensus disorder prediction 1 27 - -
Vimu11g03863 639 MobiDBLite consensus disorder prediction 12 27 - -
Vimu11g03863 639 Gene3D Transferase(Phosphotransferase) domain 1 403 625 - -
Vimu11g03863 639 ProSiteProfiles Ankyrin repeat region circular profile. 208 240 - -
Vimu11g03863 639 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 184 612 - -
Vimu11g03863 639 FunFam serine/threonine-protein kinase STY46-like 289 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03863 Vimu-Chr11 60696283 60702838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03863 103 630 MAP Kinase Kinase Kinase AT2G43850 64.662 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vimu11g03863 PK_Tyr_Ser-Thr 3.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03863 - - vum:124822479 865.529