Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03857 ATGGAGGTGACAAAGCTTGTTGTATTGCCAGCAGTTTTTGCATTATTTGTCTTTTGTCTGCATTTCATGACAAGAATGGGAAGACTGAGAAACCTGAATCTTCCTCCTGGAAGATTAGGGTGGCCTGTTGTTGGAGAAACCTTTGAGTTCATGCATGCAATGGTTGAGGGAAACGTGTTAAGGTTCCTGCAAGAGAGAGTGGAGAAATATGACTCAAGGGTGTTCAAGACATCAATGTTTGGAAATCCTGTTGCTGTGTTTTGCGGACCAGCTGGGAACAAGTTCCTGTTTAGCAACGAGAACAAGAATGTTCAAGTGTGGTGGCCTAGTTCGGTGAGGAAGCTCTTAAGGTTGTCCCTTGTTACCAAGGTTGGTGATGAGGCAAAGATGGTGAGAAAATTGCTCATGAACTTTCTTAATGCAGAAACACTCAGAAATTACTTGCCAAAAATGGATAGAATTGCTCAGCACCATATAGACACTTATTGGAAAGGGATCGTTGGCTTCTCCCTCAACATTCCTGGAACAAGGTTTCATCGTGCAATGAAAGCTGCAGATGAAATAAGGAAAGAGATTAGAATGATTCTGGAGAAAAGGAAAGTGGATTTGGAGGAGAAGAGAGCATCACCTACTCAAGACCTTCTATCGCACATGCTTCTTACATCTGACCCAAGTGGAAGGTTTATAACCGAAATGGAGATTCTTGATAACATACTTCTGCTACTTTTTGCAGGCCATGATACTTCTAGATCAGTTTTATCATTGGTCATGAAATATCTTGGACAGTTGCCTCAAGTTTATGAACATGTCTTGAAAGTTATTTTTATGACAGAACAACTTGAAATTATTCGAGGGAAAGAGGTAGGGCAGTTGTTGCAGTGGGAAGATGTTCAGAAAATGAAATACTCTTGGAATGTTGTATGTGAAGTCATGAGGTTGTCTCCACCAGTCAGTGGTGCTTACAGAGAAGCTATAAAGGATTTCACCTATGCTGATTATAACATCCCTAAAGGCTGGAAGACCAAAAGCTTCCTTCACTTTCTGAGACTCAGCAATACTAAGTGTTACCTTTTCAAGACCATTAACAGAAGTTATTGTATGGTGAAGGGGAGAACCTTGTCTCATGTTGATCATTTGCATTGGAATACTAATTCATCACACAAGGATCCAACAATCTTCTCGGATCCAGAAACTTTTGATGCTTCAAGGTTTGAAGGAGCAGGGCCTACACCCTTTGCATATGTTCCATTTGGAGGTGGCCCCAGAATGTGTTTGGGCCAAGAATTTGCTAGACTAGAGATACTTGTGTTCATGCATAATATCGTGAAACGCTTCAAGTGGGAATTGGTGATTCCTGATGAAAAGTTGAAGTATGATCCCATGCTAGAACCAGTAAAAGGACTTGAAATTCGACTTCATCCTCTAGTTCATAGTCAAATAACTTAG 1446 0.408 MEVTKLVVLPAVFALFVFCLHFMTRMGRLRNLNLPPGRLGWPVVGETFEFMHAMVEGNVLRFLQERVEKYDSRVFKTSMFGNPVAVFCGPAGNKFLFSNENKNVQVWWPSSVRKLLRLSLVTKVGDEAKMVRKLLMNFLNAETLRNYLPKMDRIAQHHIDTYWKGIVGFSLNIPGTRFHRAMKAADEIRKEIRMILEKRKVDLEEKRASPTQDLLSHMLLTSDPSGRFITEMEILDNILLLLFAGHDTSRSVLSLVMKYLGQLPQVYEHVLKVIFMTEQLEIIRGKEVGQLLQWEDVQKMKYSWNVVCEVMRLSPPVSGAYREAIKDFTYADYNIPKGWKTKSFLHFLRLSNTKCYLFKTINRSYCMVKGRTLSHVDHLHWNTNSSHKDPTIFSDPETFDASRFEGAGPTPFAYVPFGGGPRMCLGQEFARLEILVFMHNIVKRFKWELVIPDEKLKYDPMLEPVKGLEIRLHPLVHSQIT 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03857 481 Pfam Cytochrome P450 367 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g03857 481 Pfam Cytochrome P450 174 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g03857 481 PRINTS P450 superfamily signature 244 261 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g03857 481 PRINTS P450 superfamily signature 305 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g03857 481 PRINTS P450 superfamily signature 415 424 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g03857 481 PRINTS P450 superfamily signature 424 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g03857 481 PANTHER CYTOCHROME P450 26 31 157 - -
Vimu11g03857 481 PRINTS E-class P450 group I signature 414 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g03857 481 PRINTS E-class P450 group I signature 424 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g03857 481 PRINTS E-class P450 group I signature 382 406 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g03857 481 PRINTS E-class P450 group I signature 233 250 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g03857 481 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 417 426 IPR017972 GO:0005506|GO:0016705
Vimu11g03857 481 Gene3D Cytochrome P450 24 476 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g03857 481 SUPERFAMILY Cytochrome P450 32 474 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu11g03857 481 CDD CYP90-like 66 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03857 Vimu-Chr11 60572614 60576051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03857 33 342 Cytochrome P450 AT5G36110 38.375 5.22e-82 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03857 - - gmx:100778139 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03857 11 60572614 60576051 Vimu11g03857 11 60572614 60576051 ECH