Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03855 ATGTGGGCCCTTCCATCTTCCCCCATAGCCAAGCCAACACCCACCTCATCAACATCATTGCCATCTCTGAATTATCCCCCACTCTTACCTTTCTGTCACCAAAAGATATGGGTTGGTAAAGGAGCTGTTGCTGCTGCTACAAAGGGTGTGTTTGGATTTGCTATAATAATGGGTAATTGCTGGTGTAGATGGGAGTCATCAGATTATAGAGTCTCATCCAATGTAAAGTCAGAACAAAACCAGGTAACGAAGCAAAGGAATGATCATGATAGTAAGTTGCCATCAAACCCTGAGGAAGTAGAAGACCTACGGCGTGACTCAGCTGCAAATCCATTGATTGTATTCAGTTACGATGAGTTGAAGATAATCACTGCAAATTTTAGGCCAGATCGTGTGTTGGGGGGAGGAGGATTTGGAAGTGTGTACAAAGGATTCATTTCTGAGGAGTTAAGGCAGGGTCTTCCTACTCTTGCTGTAGCTGTTAAGGTTCATGATGGTGACAATAGTCATCAAGGCCACAGGGAATGGCTGGCAGAAGTGATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTGAAATTAGTTGGATACTGCTGCGAGGATGAGCATAGAGTACTGATATATGAGTACATGTCCCGGGGAAGTGTGGAACACAACTTGTTCTCAAAAATCTTGCTTCCAATGCCATGGTCCATAAGAATGAAGATTGCATTTGGTGCAGCTAAGGGACTTGCATTTCTCCATGAAGCAGAGAAACCTGACTACAATGCAAAACTTTCTGATTTTGGCCTTGCCAAGGATGGACCAGTTGGAGACAAATCACATGTTTCTACTAGAGTAATGGGAACATATGGTTATGCAGCACCTGAATACATAATGACAGGTCATCTGACTCCTAGAAGTGATGTTTACAGTTATGGGGTTGTTCTGCTTGAACTTCTGACAGGGAGAAAATCTTTAGACAAGTTAAGACCTGCTAGAGAGCAGAATCTCACAGAATGGGCTGTTCCTTTGCTGAAGGAAAAGAAGAAATTTCTAAACATAATAGATCCAAGGTTGGATGGTGATTATCCAATTAAAGCAGTTCACAAGGCTGCAATGCTTGCATATCATTGCTTGAACCGCAATCCAAAAGCAAGGCCTCTGATGAGAGATATTGTGGACTCATTGGAGCCTTTGCAGGCATACACAGAGGTTCCTGTTGGAAAAACAGTGACCATAATCAGTGAGGTTCCTGAATCTGGTTTGAAAATGAAAGATGCAAAATGA 1269 0.4263 MWALPSSPIAKPTPTSSTSLPSLNYPPLLPFCHQKIWVGKGAVAAATKGVFGFAIIMGNCWCRWESSDYRVSSNVKSEQNQVTKQRNDHDSKLPSNPEEVEDLRRDSAANPLIVFSYDELKIITANFRPDRVLGGGGFGSVYKGFISEELRQGLPTLAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLVGYCCEDEHRVLIYEYMSRGSVEHNLFSKILLPMPWSIRMKIAFGAAKGLAFLHEAEKPDYNAKLSDFGLAKDGPVGDKSHVSTRVMGTYGYAAPEYIMTGHLTPRSDVYSYGVVLLELLTGRKSLDKLRPAREQNLTEWAVPLLKEKKKFLNIIDPRLDGDYPIKAVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQAYTEVPVGKTVTIISEVPESGLKMKDAK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03855 422 Gene3D Phosphorylase Kinase; domain 1 88 210 - -
Vimu11g03855 422 Pfam Protein kinase domain 130 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03855 422 MobiDBLite consensus disorder prediction 82 103 - -
Vimu11g03855 422 ProSiteProfiles Protein kinase domain profile. 127 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03855 422 FunFam Serine/threonine-protein kinase BIK1 94 210 - -
Vimu11g03855 422 MobiDBLite consensus disorder prediction 76 103 - -
Vimu11g03855 422 PANTHER OS01G0588500 PROTEIN-RELATED 86 394 - -
Vimu11g03855 422 ProSitePatterns Protein kinases ATP-binding region signature. 133 162 IPR017441 GO:0005524
Vimu11g03855 422 Gene3D Transferase(Phosphotransferase) domain 1 211 405 - -
Vimu11g03855 422 SUPERFAMILY Protein kinase-like (PK-like) 100 390 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03855 Vimu-Chr11 60561245 60566916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03855 70 390 Glycoside Hydrolase AT3G07070 44.509 4.23e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu11g03855 Pkinase 1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03855 - - gmx:100775722 693.345