Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03842 TTGGATGAGGAAGTACAAGTTCATGGTGGTGAGACTGAGGGAATACAAAATGAGGAAGGTGTTAATGAGGAGACAGTTCAAGTTCATGTTGATGGTGAGGAAGTAGAAGTTGATGTTGGTGAGAGTGAGACAAAACAAAATGAGGAAGGTGTTAATGAGGAGACAGTTGAAGCTCATGTTGATGGTGAGGAAGTCCAAGTTGATGTTGGTGAGACTGAGGAAGGTCATGACGATGAGACAATTCGAGTTGATGTTGAGGGTGAAGTTAACACAACAGTTGTGAGTGATTGGAGTTCACCAGATGATGATATTGGTGAAGTAAATATTATGGATGGTGAAGTGAATATTATGGATAATGAAGTGCATAGTGTGGATGATTTAGTAGACGTAAACATCCAGTGTGACTTTAGTCAAAGAGATAGTTCTGCCAATATGGAAGTTGATTGCAGTGTTATTTCTGAGTCAGATTTAGAAGAACATGACATTAGTGATAGTAGTTTATTCAATGATGAATGGGATACATCCATCTCTGATATGTGCTTTGTCTGTCTTTGTTCTGCCTTTATGGTATATCCAATATCTTGTGGCTGTAATACTCCTAACTTCTGTCTACAAATTCTATTCTGTTTCCAGACTCAACTGAAATCTGAAGTTCGTGTTCCATTTATGATAGCTGTTTTTTGCATTCTGATTGTTTCACATGCATTAGAAAATACTTTACTAGATAATGAAGATGAAGGGCAGCACCAGTCAGAATCCCAAGTGCAGTCCCCGTCTGCAAATGGAATTTCTGATTCCGCTATTAGAACCCAGAATGTCAATGTACAGTATGCAACACCTGGCCAGCTTGGAGCTGGGCATGCAATGGTACCACCTGTGTATCCATATCCAGATCCTTATTATAGAAGCATCTTTGCTCCTTATGATACTCAACCTTATCCCCCACAAGCCTATGGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTCCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAATATCACGGTATATTGAGACGTAGACAATCCCGTGCTAAAGCTGAATCAGAAAATAAAGCTATAAGAAATAGGAAGCCATACTTGCATGAATCTCGACACATGCACGCACTGAGAAGACCGAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGAAGAGAACCAGCATAATGATGTAGCATCAGCAGACAAATCACAATCCAATATCAATCTCAATTCTGATAAAAATGATCAAACGTCATCGGATAGGACATCCTGA 1320 0.4023 MDEEVQVHGGETEGIQNEEGVNEETVQVHVDGEEVEVDVGESETKQNEEGVNEETVEAHVDGEEVQVDVGETEEGHDDETIRVDVEGEVNTTVVSDWSSPDDDIGEVNIMDGEVNIMDNEVHSVDDLVDVNIQCDFSQRDSSANMEVDCSVISESDLEEHDISDSSLFNDEWDTSISDMCFVCLCSAFMVYPISCGCNTPNFCLQILFCFQTQLKSEVRVPFMIAVFCILIVSHALENTLLDNEDEGQHQSESQVQSPSANGISDSAIRTQNVNVQYATPGQLGAGHAMVPPVYPYPDPYYRSIFAPYDTQPYPPQAYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHMHALRRPRGCGGRFLNSKKEENQHNDVASADKSQSNINLNSDKNDQTSSDRTS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03842 439 MobiDBLite consensus disorder prediction 24 64 - -
Vimu11g03842 439 MobiDBLite consensus disorder prediction 362 439 - -
Vimu11g03842 439 MobiDBLite consensus disorder prediction 399 413 - -
Vimu11g03842 439 MobiDBLite consensus disorder prediction 362 380 - -
Vimu11g03842 439 MobiDBLite consensus disorder prediction 1 64 - -
Vimu11g03842 439 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 345 400 IPR001289 GO:0003700|GO:0006355
Vimu11g03842 439 ProSiteProfiles NF-YA/HAP2 family profile. 343 403 IPR001289 GO:0003700|GO:0006355
Vimu11g03842 439 PRINTS CCAAT-binding transcription factor subunit B signature 377 400 IPR001289 GO:0003700|GO:0006355
Vimu11g03842 439 PRINTS CCAAT-binding transcription factor subunit B signature 346 368 IPR001289 GO:0003700|GO:0006355
Vimu11g03842 439 SMART cbf3 342 403 IPR001289 GO:0003700|GO:0006355
Vimu11g03842 439 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 247 438 IPR001289 GO:0003700|GO:0006355
Vimu11g03842 439 Gene3D - 343 404 - -
Vimu11g03842 439 MobiDBLite consensus disorder prediction 243 262 - -
Vimu11g03842 439 MobiDBLite consensus disorder prediction 414 433 - -
Vimu11g03842 439 ProSitePatterns NF-YA/HAP2 subunit signature. 348 368 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03842 Vimu-Chr11 60398689 60413090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03842 240 439 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.921 5.95e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vimu11g03842 CBFB_NFYA 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03842 K08064 - gmx:100499754 370.933