Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03840 ATGCTCCATGCTTACGCTAGCAACCACAGACTCTACGAAGCTATCGACCTCTTTCGTCAGATTCCCTTCAAGGACGTCGTTTCCTGGAACTCCATGATTAAGGGGTGTCTACATTGCGGTGATATTGTCACCGCCAGGAAGTTGTTCGACGAAATGCCGAACCGAACCGTTGTGTCGTGGACCACCCTCGTCGATGGGTTGCTGCGCTTGGGAGTTGTCGAGGAGGCTGAAGCCTTGTTCTGGGCAATGGACCCTATGGACAGGGATGTGGCTGCGTGGAATGCAATGATTCATGGGTATTGTGGTAATGGTAGAGTTGATGATGCTTTGCGATTGTTCCGCCAAATGCCTTCTAAGGATGTGATTTCTTGGAGTTGTATCATTGCTGGGCTTGATCACAATGGGGAAAGTGAACAAGCATTGGTTGTTTTTCGCGACATGGTGGCGTCGGGTGTGTGTCCATCTTCTGTTGCCTTGGTTTGTGGGCTGTCTGCTGCTGCTAAGATACTGGCTTTTCACGTGGGGATTCAAATTCATTGCTCTGCGCTTAAGCTGGGTGACTGGCGTTTTGATGAATTTGTTTCTGCTTCACTGGTTACGTTTTATAGTTGTTGCAAACAGATGGAATCTGCGCGCTGGGTTTTTTGTGAGGCACTTTGTAAGAATGTGGTGGTTTGGACAGCTCTATTGACGGGGTATGGTTTCAATGATAAGCATCTAGAGGCGTTGGAGGTGTTTAGAGAAATGATGCGGATTGGTGTGATTCCCAATGAGTCTTCCTTCACCAGTGCTTTGAATTCTTGTTGTAGATTGGAGGATCTAGAGAGGGGTAAAGTGATCCATGCTGAGGTGGTTAAGATGGGTTTGGAAAGTGGTGGATATGTGGGAGGTTCTCTTGTTGTTATGTATAGTAAATGTGGTTATGTCAGTGATGCAGTTTCTGTGTTTAAGGGGATTAATGAGAAGAGTGTTGTCTCGTGGAACACGGTCATTGTTGGTTGTGCACAGCATGGATGTGGCATGTGGGTTCTAGCATTCTTTAATCAAATGCTGCGTCAAAGAGTAGATCCAGATGGAATCACATTAACCGGTTTGCTTTCTGCCTGTAGTCGCTCTGGTATGTTACAGAAAGCAAGGTGCATCTTCAGATACTTTGGCCAGGAAAGATCAGTTACACTTACGATTGAACACTATGCAAGCATGGTGGATGTGCTTGGCCGGTGTGGAGAGCTTGAGGAAGCAGAAGCACTGGTGATGAGCATGCCAATGAAAGCAAGTTCAATGGTATGGCTGGCTTTACTGAGTGCGTGCAGGAAGCACTCTAATTTAGATGTAGCTGAAAGAGCTGCAAATCGGATATTTGAAATGGAACCTGATTGTAGTGCTGCGTATGTATTGCTATCAAACTTGTATGCTTCTTCGAGCAGATGGGCTGAAGTAGCTTTGATACGTAAAAAAATGAAACATAATGGAGTTGTGAAACAACCAGGATCCAGTTGGCTAACCTTAAAAGGACAAAAGCACAAATTTCTCTCTGCAGATAGGTCACATCCTCTTACTGAGAAAATTTATCAAAAGCTAGAGTGGTTAGGAGTGAAGTTAAAAGAATTAGGTTATGTTCCAGATCAACAATTCGCTTTGCATGATGTGGAAACTGAGCAAAAAGAAGAAATGTTGTCTTACCATAGTGAAAGGCTTGCGATTGCATTTGCGCTGCTTAGCACTGTGGAAGGCAGTACAATAACATACGAGATTCTAGCCGCTTTCATCATTTTAAGAATGGCATATGTTCCTGTGGAGATTATTGGTAGGACATTGTTCGAATTGCAGTTTGAACTATTGCTGGCTTTAAAGGTGGCAATGAGTGATAATCGGTCAGAACTTGGAAGGCCTGCCTCAAGTAAAAGAAGGTTGAAGGATTTATTGCTTCAAAAAGATAATCGTTTTTGTGCTGATTGTAATGCTCCAGATCCTCAATGGGCATCAGCAAATATTGGAGTTTTTATATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGTGCTCATGTATCAAAGGTTTTGTCCGTGACATTGGATGAATGGTCAGATGAGGAAATAAATGGAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATATTTCACAAGGATCTGTAAAACCTGGACCAGATGCCAGTCACGAGCAGCGCAAAAATTTCATCCGGTCGAAGTATGAACGTCAAGAATTTTTGAAACCTAGTTTGCGCATTAAGTCGGGAAGAATGAATCCCCCATCAAATATTTCCAGAGGGATTATGGATGGGATTATGGATAATTTTCGAAGTATTAGCGGTTCGCGTGAGGAAGGAAAGGAAGGATTTATTGGAAATTTGAAGGTAAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACCAGTGATCCATATGTTATCTTCACACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAAGAACTTATGCTGTCTGTTACTCGGCCATTTGGATTATTGAATTTGAAGGTATTTGATTATGACTTATTTTCATCTGATGATATAATGGGGGAAGCAGACATTGATCTTCATCCCCTGATTACATCTGCAATGGCCTATGGAGATCCAAGCATGTTTGATGATATGCAGATAGGAATATGGATGAAATCTCAGGACAATGCGCTTATAGATGATAGCGAAGTCAAAATTGTTGGTGGAAAAGTTAAACAGGAGATATTAATCAAGCTCCAGAACGTTGAATCCGGAGAATTAGAGTTAGCACTTGAGTGGATGCCTTTAGAGTCTTGA 2856 0.4244 MLHAYASNHRLYEAIDLFRQIPFKDVVSWNSMIKGCLHCGDIVTARKLFDEMPNRTVVSWTTLVDGLLRLGVVEEAEALFWAMDPMDRDVAAWNAMIHGYCGNGRVDDALRLFRQMPSKDVISWSCIIAGLDHNGESEQALVVFRDMVASGVCPSSVALVCGLSAAAKILAFHVGIQIHCSALKLGDWRFDEFVSASLVTFYSCCKQMESARWVFCEALCKNVVVWTALLTGYGFNDKHLEALEVFREMMRIGVIPNESSFTSALNSCCRLEDLERGKVIHAEVVKMGLESGGYVGGSLVVMYSKCGYVSDAVSVFKGINEKSVVSWNTVIVGCAQHGCGMWVLAFFNQMLRQRVDPDGITLTGLLSACSRSGMLQKARCIFRYFGQERSVTLTIEHYASMVDVLGRCGELEEAEALVMSMPMKASSMVWLALLSACRKHSNLDVAERAANRIFEMEPDCSAAYVLLSNLYASSSRWAEVALIRKKMKHNGVVKQPGSSWLTLKGQKHKFLSADRSHPLTEKIYQKLEWLGVKLKELGYVPDQQFALHDVETEQKEEMLSYHSERLAIAFALLSTVEGSTITYEILAAFIILRMAYVPVEIIGRTLFELQFELLLALKVAMSDNRSELGRPASSKRRLKDLLLQKDNRFCADCNAPDPQWASANIGVFICLKCCGVHRSLGAHVSKVLSVTLDEWSDEEINGMIEVGGNSSANSIYEAYISQGSVKPGPDASHEQRKNFIRSKYERQEFLKPSLRIKSGRMNPPSNISRGIMDGIMDNFRSISGSREEGKEGFIGNLKVKVIKGTDLAIRDMMTSDPYVIFTLGQQTVQTTVIKSNLNPVWNEELMLSVTRPFGLLNLKVFDYDLFSSDDIMGEADIDLHPLITSAMAYGDPSMFDDMQIGIWMKSQDNALIDDSEVKIVGGKVKQEILIKLQNVESGELELALEWMPLES 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03840 951 ProSiteProfiles ARF GTPase-activating proteins domain profile. 635 758 IPR001164 GO:0005096
Vimu11g03840 951 SMART C2_3c 796 891 IPR000008 -
Vimu11g03840 951 Pfam DYW family of nucleic acid deaminases 538 582 IPR032867 GO:0008270
Vimu11g03840 951 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 793 951 - -
Vimu11g03840 951 Gene3D Tetratricopeptide repeat domain 296 530 IPR011990 GO:0005515
Vimu11g03840 951 NCBIfam pentatricopeptide repeat 122 155 IPR002885 -
Vimu11g03840 951 NCBIfam pentatricopeptide repeat 224 258 IPR002885 -
Vimu11g03840 951 NCBIfam pentatricopeptide repeat 27 54 IPR002885 -
Vimu11g03840 951 NCBIfam pentatricopeptide repeat 92 121 IPR002885 -
Vimu11g03840 951 NCBIfam pentatricopeptide repeat 325 358 IPR002885 -
Vimu11g03840 951 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 795 939 IPR035892 -
Vimu11g03840 951 CDD C2_ArfGAP 794 938 - -
Vimu11g03840 951 CDD ArfGap 638 744 - -
Vimu11g03840 951 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 116 IPR046960 GO:0003723|GO:0009451
Vimu11g03840 951 Pfam C2 domain 795 885 IPR000008 -
Vimu11g03840 951 Pfam PPR repeat 122 152 IPR002885 -
Vimu11g03840 951 Pfam PPR repeat 398 422 IPR002885 -
Vimu11g03840 951 Pfam PPR repeat 325 353 IPR002885 -
Vimu11g03840 951 Pfam PPR repeat 361 383 IPR002885 -
Vimu11g03840 951 Pfam PPR repeat 58 83 IPR002885 -
Vimu11g03840 951 Pfam Putative GTPase activating protein for Arf 636 751 IPR001164 GO:0005096
Vimu11g03840 951 SMART arf_gap_3 635 757 IPR001164 GO:0005096
Vimu11g03840 951 PRINTS HIV Rev interacting protein signature 647 666 IPR001164 GO:0005096
Vimu11g03840 951 PRINTS HIV Rev interacting protein signature 666 683 IPR001164 GO:0005096
Vimu11g03840 951 PRINTS HIV Rev interacting protein signature 687 708 IPR001164 GO:0005096
Vimu11g03840 951 FunFam Pentatricopeptide repeat-containing protein 177 281 - -
Vimu11g03840 951 Pfam E motif 440 501 IPR046848 -
Vimu11g03840 951 SUPERFAMILY ArfGap/RecO-like zinc finger 635 752 IPR037278 -
Vimu11g03840 951 ProSiteProfiles C2 domain profile. 778 893 IPR000008 -
Vimu11g03840 951 Pfam PPR repeat family 221 270 IPR002885 -
Vimu11g03840 951 Pfam PPR repeat family 24 55 IPR002885 -
Vimu11g03840 951 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Vimu11g03840 951 Gene3D Tetratricopeptide repeat domain 1 84 IPR011990 GO:0005515
Vimu11g03840 951 Gene3D Tetratricopeptide repeat domain 173 285 IPR011990 GO:0005515
Vimu11g03840 951 Gene3D Tetratricopeptide repeat domain 85 172 IPR011990 GO:0005515
Vimu11g03840 951 Gene3D Arf GTPase activating protein 618 756 IPR038508 -
Vimu11g03840 951 FunFam pentatricopeptide repeat-containing protein At5g46460, mitochondrial 297 530 - -
Vimu11g03840 951 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
Vimu11g03840 951 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Vimu11g03840 951 Pfam PPR repeat 88 116 IPR002885 -
Vimu11g03840 951 FunFam stromal membrane-associated protein 1 isoform X1 621 755 - -
Vimu11g03840 951 Gene3D C2 domain 793 951 IPR035892 -
Vimu11g03840 951 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03840 Vimu-Chr11 60373839 60382073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03840 621 950 C2H2 Transcription Factor Family AT4G21160 69.345 8.14e-167 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03840 - - gmx:100806042 1042.72