Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03839 ATGGCTTCCTCGGCGTTTGTGAGCTTCCACGACGAAGACATCCACTTCATCACAGATTTTGTTCTTGATCCTCTCAGAAGTAGCGGCATCCACGTCTTCGTTAAAGGTGAATCCACAACATTCGACCTGTTTCAAGCGATTGAACGCTCTCGCTTTCTTATCGTGGTCTTTTCCAAGAACTACCCTTCCTCAATTTGCTGTTTACGTGAACTAATGGCGATCATCAATGCCGTTGAATCTTCTCCATGGTCCAACAACTTTCTGTCTATTTATCATGGTGTCCAACAATCTGAGGTACTACTTCAGATGGGATGTTATGGGCAAGTCTTTTCGAAATACGAAGAAAGATTTAGGGAACACAAGGAGAGGATGGAAGAAATGCAGAGATGGAGAGAAGCTCTCACACGAGTGGCTGGTTTCCCGGGTTTGAATATGGAAAATGTGACAGGATATGGAGGTTTTGATTTTGTTCAATATGCAGCACGTATTTTCGGTCGTGAGTTTTTAACTTCTCAAAATGAAACAATATCCAGTAGATATGGAAACTTTGACGATATTGTTCAATATAAAGATGGAGATGAAGTTTCATACAAGGAGCTGCGAGGTTTGATCAGGTTAAGGGATTTTATCAGCCTCGTGTTGACTTATCCTGTGAAGTTAGAAGAGGACGGTGTATTAAGATCCTGGATTAGTTCATTTCCTGAATGGAAAGCTCAGTTACTTTCCACTGATGGTTTTTCTGTGATTTGCAAACCATGGAATCTACTAACTGAGAAGGCACTGGGATGCATGAAAGGATTCATGCCAGTGGAAATAATGGCTGAAATAGAAAGTGGTGAGAGATCCCTCTTCAACCGCCATAATGATGTAATACCAGAAGGCCTACTCCCCCTAATTGTTGATCTTGCTGTTAACCAACTAATTCAAACTTTGTTTTCCGGAGATTACTGTGCGCGCTATATAAGATTGTTGACCAGAAACTCGTCTGAAAAAGAATCTGTAGTGAACAAAGTACTTACAGCCTTGGAAGATAAGCACGTCATGTTTGGAATTGACAAAGATTTTCTGATGGCCGTATGGATCAATGCTTTGACATGTGAGACTGATGCAGAGGTTCAAGTTCAAGAAGAAATCAATATGATCATGGGAAGTATTTCTACGACAGAGGGTGATGACTTGTTAACTACACTAGACACTGACAAAAAGAAGAGGAGCAATAGGCTGTTGGTGATTGTAGTGGATGCAGATAGCAACAAAAGGCTGGACCTCCAAAAAGTTCAATTTCCAACTGGGATAGTGGTGTTGATAACAACTGAGTCTTCAACACAGGCGGTGAAGGATGATGACTTTGGAATTGCATGCACAATGGATTTGAATATTTGGACGCAGGATCATATGTTGCCTTGGAAACTCTTCTATACCTATGTGGGAAGTTGCATCAACTGTTCATCAATGACAATTCAGAAAATAGCAGTGGAGATTGTCAAGAAAAGCCATGGTCATCTTCTTGCCATTGTCCTTGTGGCAAAACACCTTAGGTATGTGAAAGATGATAAATACTGGGAGTTTGTACTTGACAAATTAAGCAATCCGAATCCTTTCTATGATTATCAAAATTGTGACGGAATTGGCATTAGCAGAGTCATGGTCAATGCATTTGTAAATATTATTTGGGAAGGCATCGATGATGAACTAAAGCTTTGCCTCCAACTCAGTTTACCTGTTCACAACATTAAAAATGGGGTGAGAGATGATATCTTGGTTTCTTATTGGGCTAATATATTACGATACACACAAGAGCTTGGTGAATACAAGAGACAGTTACAATATTACCTTGAGGAGCTTCTAGACTGTTTTGTCTTGTTGAAATTTGAAAGTAGAGAGGTCTATTTGCCAATAGAAACCTATGATATAATTAAATCATTACACATCTCAAAACCTTCCATCATATGGCATGGTGCATTAGGATTGACGGAGATTGGACAATGGCACAGTCTTATTCAGATAGAATTGGTTAACAATAATATATGTGAATTACCACAATCACCAGACTGCCCCAAACTCAAAGTGTTGTTGTTGCAGGGCAATGCTGATTTATTGGATATCCCTGATTCATTTTTCGACCATATGCTTCTACTTCAACACTTGGACTTATCCTACACTAGTATAAGGGATTTGCCCCCTTCTCTCACCAAATCGATGCAACTTAAGAAATTATATCTTAAAGGTTGTGATCTCATCATGGAAATATCCCCGCAAATTTTTCAGCTGAAGAATCTTGAAGAGCTTGATCTTGACGGGACTTTGATAACCCATTTGCCAAAAGACATTCGAGAATTGATCAACCTGCAACGCTTAGCCCTATGCTTTGATGCATACCATCATGTACTTAGTCATGGTAATAAAGGCAGGCAGATTTCTAACACAATGATAATTCCTTCTGGAGTGATATCAAATCTTACTCAGTTGAATTATCTAAGCCTTGACGTGGACCCTGAAGATGAGCAATGGAGCGAGAACGTTAATAGTGTCTTGGTGGAAATTTTGGGACTAGAAAAGTTGAAGACGGTGAGCATATATGTTCCAAAGGCTGATCTCTTGGAACTCATACCAGCCGAAAAATCTCTCAATTTCCGATTGGTTGTTGGTCATCACATGCGGCGTCTAATATCCCGTGTAACACCTGAACTAGAGACAAAATTCAAAGATTTTGATTATAGCATGAAGTTTGTTAATGGTGTAAATGTTCCCAATGGAGTAAAGATGATTCTTAGTCGAGTCAAGGCTTTGTACCTTGACCGACATATGACCATCAAGAGTCTCTCGGATTTCAATTTGAGGAACATACGCGGGTTAAAAGTTTGCATATTGGCGGAATGTAATGAAATGGAAACAATTTTCGATGGTGATAATTCAGCTGATGAAGATTTTTCTCTAATGTTGTTGGAGTTGTTGAGTGTATTTTATATGAAGAGTTTAAGAAGCATTGGCCAAGAGTGTAATACCTTGTACTGCTTAAAGTATATAGCATTACACAGTTGCCCCATGTTAACTACTATCTTCTCAGATACTTTTATCAGCCTTCCCTTTTTGGAGGAGATTAGTATTGAAGACTGTCCAAAACTAACTACCCTGATAAGTAGTGATGCTAGACCAAAGCAAAATCCAGAGTTTTTCCTCCTCAACTTGAGAGTTATGTCGCTTCTTTATCTTCCCAACTTGGTGAATATTTTTAATGGCCTGCGTGTTGAACATGCTTTAGAAGAAATGAATTTTTATTGTTGCCCAAAACTCCAAAGTCTTTCCAGATCGGAGTTACCATCAAAATATTTGAAGTTCATCAAAGGAGAAAGGATGTGGTGGGAAGCATTGGAATGGAGTGTATCAGAGTGGGGTAATGATGGGCGACCCAAATTCTTTGAGCAATTTTTTAAACCAATTAATGTGGAAGCTGACACGATGAACCCAGCAGCTGCACAACTAAATAAATATCACCGCGGAATGTATCAGGGAGTTTCAAGTTCTACCGAGTTGATGACGAAGTTACATTTGGAAACGCCTATTTTGTCGCCTTCAACCCCATTTCCGTTATCGGGTAGCAAAGAAGGTGAAGCCCAAAAGCGGAAAGCCGTTACTGAGCCAATAATAGTACCACCGTTGTTAAGGAGTTCAAACCAGGGTAGTCGAAAAAGAAGACTTCTCCCCCAATCTGTCAAAGAGATACGTACTGATGAGACTTTAGATGATGGATTTAGCTGGAGAAAAATTGCGCAGAAGAACGTTAAAGGAGCTAAGTATCCCAGAGAATATTACCGCTGCATATACGGAACTACACATGGATGCCAAGCAAGAAAACGTGTTCAAAGGTTAGATGGCGATCCAACAACATTTGAGGTAACATACGGAGGAATTCATAGTTGCACCCAAAACGACGATTTGATCGCTGAAAGTGGAGATGCGGAAGCATTAGAAGATTTTGGGGGAAAACCAGATTCTGCATCATCTAGCAACAAAAATGCTATTATTGCTTATAGAAGAGTATAA 4044 0.3966 MASSAFVSFHDEDIHFITDFVLDPLRSSGIHVFVKGESTTFDLFQAIERSRFLIVVFSKNYPSSICCLRELMAIINAVESSPWSNNFLSIYHGVQQSEVLLQMGCYGQVFSKYEERFREHKERMEEMQRWREALTRVAGFPGLNMENVTGYGGFDFVQYAARIFGREFLTSQNETISSRYGNFDDIVQYKDGDEVSYKELRGLIRLRDFISLVLTYPVKLEEDGVLRSWISSFPEWKAQLLSTDGFSVICKPWNLLTEKALGCMKGFMPVEIMAEIESGERSLFNRHNDVIPEGLLPLIVDLAVNQLIQTLFSGDYCARYIRLLTRNSSEKESVVNKVLTALEDKHVMFGIDKDFLMAVWINALTCETDAEVQVQEEINMIMGSISTTEGDDLLTTLDTDKKKRSNRLLVIVVDADSNKRLDLQKVQFPTGIVVLITTESSTQAVKDDDFGIACTMDLNIWTQDHMLPWKLFYTYVGSCINCSSMTIQKIAVEIVKKSHGHLLAIVLVAKHLRYVKDDKYWEFVLDKLSNPNPFYDYQNCDGIGISRVMVNAFVNIIWEGIDDELKLCLQLSLPVHNIKNGVRDDILVSYWANILRYTQELGEYKRQLQYYLEELLDCFVLLKFESREVYLPIETYDIIKSLHISKPSIIWHGALGLTEIGQWHSLIQIELVNNNICELPQSPDCPKLKVLLLQGNADLLDIPDSFFDHMLLLQHLDLSYTSIRDLPPSLTKSMQLKKLYLKGCDLIMEISPQIFQLKNLEELDLDGTLITHLPKDIRELINLQRLALCFDAYHHVLSHGNKGRQISNTMIIPSGVISNLTQLNYLSLDVDPEDEQWSENVNSVLVEILGLEKLKTVSIYVPKADLLELIPAEKSLNFRLVVGHHMRRLISRVTPELETKFKDFDYSMKFVNGVNVPNGVKMILSRVKALYLDRHMTIKSLSDFNLRNIRGLKVCILAECNEMETIFDGDNSADEDFSLMLLELLSVFYMKSLRSIGQECNTLYCLKYIALHSCPMLTTIFSDTFISLPFLEEISIEDCPKLTTLISSDARPKQNPEFFLLNLRVMSLLYLPNLVNIFNGLRVEHALEEMNFYCCPKLQSLSRSELPSKYLKFIKGERMWWEALEWSVSEWGNDGRPKFFEQFFKPINVEADTMNPAAAQLNKYHRGMYQGVSSSTELMTKLHLETPILSPSTPFPLSGSKEGEAQKRKAVTEPIIVPPLLRSSNQGSRKRRLLPQSVKEIRTDETLDDGFSWRKIAQKNVKGAKYPREYYRCIYGTTHGCQARKRVQRLDGDPTTFEVTYGGIHSCTQNDDLIAESGDAEALEDFGGKPDSASSSNKNAIIAYRRV 1347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03839 1347 Gene3D - 2 162 IPR035897 -
Vimu11g03839 1347 SUPERFAMILY L domain-like 647 1109 - -
Vimu11g03839 1347 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 307 1126 - -
Vimu11g03839 1347 Pfam Leucine rich repeat 686 746 IPR001611 GO:0005515
Vimu11g03839 1347 Gene3D Ribonuclease Inhibitor 626 853 IPR032675 -
Vimu11g03839 1347 Gene3D Ribonuclease Inhibitor 916 1114 IPR032675 -
Vimu11g03839 1347 SMART WRKY_cls 1247 1309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g03839 1347 ProSiteProfiles TIR domain profile. 1 161 IPR000157 GO:0007165
Vimu11g03839 1347 Gene3D - 467 541 IPR042197 -
Vimu11g03839 1347 Pfam WRKY DNA -binding domain 1248 1307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g03839 1347 SMART LRR_typ_2 710 733 IPR003591 -
Vimu11g03839 1347 SMART LRR_typ_2 757 780 IPR003591 -
Vimu11g03839 1347 Pfam NB-ARC domain 402 530 IPR002182 GO:0043531
Vimu11g03839 1347 Pfam TIR domain 29 136 IPR000157 GO:0007165
Vimu11g03839 1347 Gene3D WRKY domain 1235 1309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g03839 1347 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 142 IPR035897 -
Vimu11g03839 1347 SUPERFAMILY WRKY DNA-binding domain 1243 1309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g03839 1347 ProSiteProfiles WRKY domain profile. 1242 1306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g03839 1347 SMART till_3 2 140 IPR000157 GO:0007165
Vimu11g03839 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 569 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03839 Vimu-Chr11 60356935 60364613 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03839 1225 1309 WRKY Transcription Factor Family AT4G11070 50.549 1.98e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g03839 NB-ARC 2.6e-05 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03839 - - vum:124825720 2251.86