Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03837 ATGCATAAAAACATATATAGTTTTACCGAAAAGTTGACAACTACTGCTTTGCACTGCAGAGGATATTACCGCTGCACACATAAACACACACGAGGGTGCCGAGCAACAAAACAAATTCAAAGGTTAGATGAAGACCCAACAACAATTGAGGTAACATACATAGGAATTCATAGTTGCACCCAAAAACTGGATTTGAGAGCAGAAAGTGGAGATGCCGAAGTATTAGTGGCAGAAAGTAGAGATGCCAAAGTATTAGTAGCAGAAAGTGGAGATGCCGAAGTATTAGAAGATTTTTGGGGAAAAGCAAATTCTGTATCATCTAGCAACAAAAGTTCTATTACTGTTTTGGAGGGAATATCAGCTGAACCACAAGAACTTCAGATGAGTCTACCTTTAGAAGATGATTTAGATTTGAGCGTATGA 423 0.383 MHKNIYSFTEKLTTTALHCRGYYRCTHKHTRGCRATKQIQRLDEDPTTIEVTYIGIHSCTQKLDLRAESGDAEVLVAESRDAKVLVAESGDAEVLEDFWGKANSVSSSNKSSITVLEGISAEPQELQMSLPLEDDLDLSV 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03837 140 ProSiteProfiles WRKY domain profile. 20 58 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g03837 140 Pfam WRKY DNA -binding domain 10 59 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g03837 140 SUPERFAMILY WRKY DNA-binding domain 10 60 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g03837 140 Gene3D WRKY domain 7 54 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g03837 140 SMART WRKY_cls 10 61 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g03837 140 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 82 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03837 Vimu-Chr11 60329617 60331261 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03837 2 65 WRKY Transcription Factor Family AT4G11070 47.761 9.00e-15 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g03837 WRKY 6.9e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03837 - - vum:124825720 194.126