Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03835 ATGTCTGGGCTTGAACTTGTTGGCCCTCTTGTTGGAGAGATGGGGTCGATTGGGGTTGGAGAAATGCATACTACAATTGCATCTAAATTTGCATTTTCCAAAAGTCTGGATGACAATTACAACATTTTGGTTAAAGATACAGAGATGCTACATGCAATAAAGAAGGATAAAGAGATGAAAGCTCAAAGAAACAGCCATAAAGATACTACCAATGCTTACAAACTGTGGACAAACAGGGTATCAGAGACCACTGAAGAAGTACAGAAGCTGAAGCTTAAATACGAAGAAGAGACCCTACCCAGGTGGCGGATTCTAAAGCGTTCCGATCTGAGTGAAGAAATGGAGAAGAAGAGCAATTGTGTTCGTCAACTTATGAACGATGAATGTTTAAAAGATTTTCTTGTTGATAAACCACCAGAGCCTGTTTTAAAGGAGTTAAATGTTCCACAGATAAGTGGATATCCAACCCTTCAAGGCGCCTTGGATAATACTCTGGTTTTGCTGAAAAATAATAAGATCAAGATCATTGGAGTGTGTGGAACAAAAGGGGTGGGGAAAACAACAATAATGCGGAATCTAAATAACAATGAAGAGATAGCTAAACTGTTTGAAATTGTCATTTTTGTAAAAGTCACATCTAATGATCGTAAGCTTCAAGAGAAAATTGCTCATCGGTTGATGTTGGACAAAGGGATCAACAAGGAGGATAGTGACGATGTTGCAAGAAGAATACACAGAGAGCTAGAGAAGAAAAGATATTTATTAATTTTGGACGAGGTTGAAGATGCCATCAATTTGGAGCTGTTGGGAATCCCAAGAGATAATAACAATGGCAGTAAGGTGGTAATTGTCACTCGATTCCCTCTTGTTTATAAGTTGAATAGGGTGCAGAGGGTCATCAAAGTCGCGGAGCTATCTCCCGATGAAGCATGGAAGATGTTTAGAGATACTGTCCATGCCTTCAATCCTAAGATTGATTCCCCTGACATTCAACCAACTGCAAAACTTGTATGCAAAAGATGCTCTCGTCTTCCACTTCTCATTTACAATATAGCAAACTCTTTTAAATTGAAAGAGTCTGCTTCTAGTTGGTGGGCAGGACTTGAAGATCTTAAACCATGGCCAGAACTTCAAAACCAAGGTTTAGAAGAGTTGTACTCGTGTCTGAAGTTCTGTTATGATGAACTAAATGATAAAAGGAAGCAGAAATGCTTTCTATACACTTCACTGTACCCTGCAGATAGCAAGGTTTACTCTGATTATTTAGTGGAGTGTTGGGCAGCACAAGGTTTACTTGGTGATATAAATGATACAAGGTCATATCAAAGTGCACGCAATTGTGGTATTGACATATTAGAACATCTTGCTAATGTCTCTCTACTAGAGAAAGGGGAAGCAATGATATATGTTAACATGAACCATTGCATGAGACAACTTGCATTGCACATATCCTCTAAAGATCCTGAGTGTAGCTTTTATCTCCAAGACGGTGAAGAATCTGAAAATCTCTCAAATTCAAGAGCTTGGCAGCAGGCTAGGTGGGTCTCTATGAGACAAGTACATGAGTTACGAAGAAGTCAAGATTGCAGCCCGATTTTGACACTGTTGCTGAGAAAAAATCCCGAGCTAACTGCACTACCAGAGTGTTTTTTTGAGAACATGAGCAATCTACTTCTGCTAGATTTGTATAGTAGCATGATTACACAACTGCCATCATCTCTATCAAAATTGACTGTTCTACGGGGTTTATTCTTGAACAGATGTGAGCTATTGGAATCACTATCATCTGAAATAGGATTACTTCAATTTCTAGAGGTCCTTGACATACGTGATACTAAAGTAATTTTCATACCTCTACAAATTGGATTCTTGACTAAGCTAAGATGCCTGCGAATCCCATTCATTGCAAGTGAAGATAATGAAGCTCAAAATGTTCATGTGATTTCAAAGCTTCGTAGGTTGGAAGAATTAACTATTCAAGTCATATCCTATGAACAGTGGTGCAATGATGCTAATAATGTGCTGGCACATGTGGCTTCTTTGGAAAATGTAACTCATCTCAGATGTTGTTTTCCCTCCTCAATCATTCTTGGAGAATTTCTTTCAAGAAGCAGATCATGGCATAACAAGCAGAATTCATTTAGATTCACTGTAGGATGCCAGAACTCAAGGCGACCTCAAATACTTGAATCCTTTGAATATAAAATTACTAATTATTTGAGGTACTGCAATGGTGGACAGAGGGATGACCCGGCAATTATTGAGCTTGTTTGGAACGCATTCGTGGTCTTTTGA 2295 0.3874 MSGLELVGPLVGEMGSIGVGEMHTTIASKFAFSKSLDDNYNILVKDTEMLHAIKKDKEMKAQRNSHKDTTNAYKLWTNRVSETTEEVQKLKLKYEEETLPRWRILKRSDLSEEMEKKSNCVRQLMNDECLKDFLVDKPPEPVLKELNVPQISGYPTLQGALDNTLVLLKNNKIKIIGVCGTKGVGKTTIMRNLNNNEEIAKLFEIVIFVKVTSNDRKLQEKIAHRLMLDKGINKEDSDDVARRIHRELEKKRYLLILDEVEDAINLELLGIPRDNNNGSKVVIVTRFPLVYKLNRVQRVIKVAELSPDEAWKMFRDTVHAFNPKIDSPDIQPTAKLVCKRCSRLPLLIYNIANSFKLKESASSWWAGLEDLKPWPELQNQGLEELYSCLKFCYDELNDKRKQKCFLYTSLYPADSKVYSDYLVECWAAQGLLGDINDTRSYQSARNCGIDILEHLANVSLLEKGEAMIYVNMNHCMRQLALHISSKDPECSFYLQDGEESENLSNSRAWQQARWVSMRQVHELRRSQDCSPILTLLLRKNPELTALPECFFENMSNLLLLDLYSSMITQLPSSLSKLTVLRGLFLNRCELLESLSSEIGLLQFLEVLDIRDTKVIFIPLQIGFLTKLRCLRIPFIASEDNEAQNVHVISKLRRLEELTIQVISYEQWCNDANNVLAHVASLENVTHLRCCFPSSIILGEFLSRSRSWHNKQNSFRFTVGCQNSRRPQILESFEYKITNYLRYCNGGQRDDPAIIELVWNAFVVF 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03835 764 Coils Coil 73 93 - -
Vimu11g03835 764 Pfam NB-ARC domain 167 395 IPR002182 GO:0043531
Vimu11g03835 764 PRINTS Disease resistance protein signature 552 568 - -
Vimu11g03835 764 PRINTS Disease resistance protein signature 341 355 - -
Vimu11g03835 764 PRINTS Disease resistance protein signature 247 261 - -
Vimu11g03835 764 PRINTS Disease resistance protein signature 175 190 - -
Vimu11g03835 764 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 58 710 - -
Vimu11g03835 764 Gene3D - 145 300 IPR027417 -
Vimu11g03835 764 Gene3D - 393 482 IPR036388 -
Vimu11g03835 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 407 IPR027417 -
Vimu11g03835 764 SMART AAA_5 172 307 IPR003593 GO:0016887
Vimu11g03835 764 SUPERFAMILY L domain-like 523 669 - -
Vimu11g03835 764 Gene3D Ribonuclease Inhibitor 495 711 IPR032675 -
Vimu11g03835 764 Gene3D - 304 392 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03835 Vimu-Chr11 60309408 60311778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03835 173 565 WRKY Transcription Factor Family AT5G45050 22.141 4.31e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03835 - K13459 gmx:102661619 1270.76