Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03799 ATGCCTCGCAAAGTCAGTTATGGACTCGATTTGGACGACGACTATTACTACGATGATGATTATGACGACTATGATTACGATGATGTCGGTGCAGAAGGCCATGGAGGACCTGATACAAAGCAAGAGACCATCAGGCCAGGTCTTTGGCAATGCTCCATTTGCACTTATGACAATGACGAGAGTATGGCATTTTGTGATATTTGTGGTGTTGTACGAAGACCCTTGCCTAACATTGGAACTTCCGACAGTAGCAAAATAGCTGAAGACACACACAAAATTCCTGGAGTATCCAAGTTGGCCAGGTCTCTTTTTCAATCATTACCACAAGAGATTCCCAAAGAGGTTATATTATTTCCAAAGCTGGGTGATGGTTTCCTGACAGATGGCAGTATCTTCTACAAGCTTGAGAATGTCCGGGGAGAATTTCATGAAATTCATAAAGATTTTAGTACTCAGAGTCATCCACACCTAAACACAGATCCTTTCAAGTTTGACGTTCCATCCCCTGATGATGTCATTTTTACTGGTCTACATTCTTCCAAAGTGGGGTTGAAAGACAATGTTACAAACAAAAAAAGTTCGAAACTTTCATCAAGCATCAGAGAGATAAATGAACTCTCTGTTCAATCAAATGCTGAAAGTTCAGACAACTTATCTTCCTTAACGCAAAAGAGCAGGAAGGATAGTTCTGCCCAGAGCAAGCTTTCAAAAAATGTAGCAACTGGTCTGCAAGCAAGTGGTAAACCTTCAAACAGCTTGTCAGAATCTCTGCCAAAAGACAAAGCTGAAGATATTAATAAAATAAACTCTTTGAAAAGTGGTACAATTGATACTCAATTGAGCAAAGAGAAGTCTGGTAGTTTGTCTGCACTGTCAAAAGTCAAGGAAAGTGATAAGAATAATTTCCCTTCTATCAAAGATGGAAAACCGGAAAGTATTTCCAGCAATTTCAACAATGCTGATGTAAGATCTGGAATTTCAGACAATGCTAATGCTAAGAAACCTCATTCACGTGTTTCTTATAAGCCAGAAAAGTGGATGCTACCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAGATGCACAAGTACGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTTGATGAAAGCTCTGAAGAAAGAGAAAGGGGAATAACTATGACCGTTGCTGTTGCTTATTTTGACACCAAGAAGTATCATGTTGTTTTGCTCGACTCTCCTGGCCATAAAGATTTTGTCCCGAACATGATTTCTGGGGCAACACAAGCAGATGCTGCAATCCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGCAACAAAGGGCAAACAAGGGAACATGCACAACTTATCAGAAGTTTTGGTGTTGATCGGATCATAGTTGCTGTAAATAAAATGGATGCTGTTGCATACACCCAGGATCGATTTGATTTTATAAGGCAGCATCTGGGAGCTTTTCTGCACTCATGTGGCTTCAAAGATTCTTCTCTATCTTGGATTCCTATGAGTGCTATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGACCCTCGTTTCAAGAACTGGTATGGTGGACCTTATCTGTTAGATGCGATTGACTCTCTCCGAGCTCCTACTAGAGAATTTTCAAAACCTCTACTAATGCCAGTATGTGATGTCATCAAATCAACTACGCTTGGACAGGTATCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCTAAGGTCTTAGTTATGCCTTCAGCCGTAGTGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGAAATCAGGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCCGTTGCAGCTGCTAGGCATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCAATATTGGTGGGCACACAGTTGGAGTTTCATATACACCATGCGAAGGAACCTGCTAGAGTTTCAAAAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCGCCTCGATGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGGTTTTGAATGAGTCTGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCCATGGGAAGAACAATTGCTGTTGGCGTTGTGACAAGAATAATTGAGGACGAAGGTTAA 2364 0.4201 MPRKVSYGLDLDDDYYYDDDYDDYDYDDVGAEGHGGPDTKQETIRPGLWQCSICTYDNDESMAFCDICGVVRRPLPNIGTSDSSKIAEDTHKIPGVSKLARSLFQSLPQEIPKEVILFPKLGDGFLTDGSIFYKLENVRGEFHEIHKDFSTQSHPHLNTDPFKFDVPSPDDVIFTGLHSSKVGLKDNVTNKKSSKLSSSIREINELSVQSNAESSDNLSSLTQKSRKDSSAQSKLSKNVATGLQASGKPSNSLSESLPKDKAEDINKINSLKSGTIDTQLSKEKSGSLSALSKVKESDKNNFPSIKDGKPESISSNFNNADVRSGISDNANAKKPHSRVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGNKGQTREHAQLIRSFGVDRIIVAVNKMDAVAYTQDRFDFIRQHLGAFLHSCGFKDSSLSWIPMSAMENQNLVASPSDPRFKNWYGGPYLLDAIDSLRAPTREFSKPLLMPVCDVIKSTTLGQVSACGKLEAGALRSGSKVLVMPSAVVGTVRSLERDSNACTVARAGDNVAVTLQGVDGNQVMAGDVLCHPDFPVAAARHLELKVLVLDGASPILVGTQLEFHIHHAKEPARVSKILSVLDPKTGKVTKKSPRCLTAKQSAVIEVVLNESVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEDEG 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03799 787 FunFam Elongation factor 1 alpha-like protein 349 580 - -
Vimu11g03799 787 MobiDBLite consensus disorder prediction 207 268 - -
Vimu11g03799 787 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Vimu11g03799 787 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Vimu11g03799 787 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 356 580 IPR000795 GO:0003924|GO:0005525
Vimu11g03799 787 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 679 783 IPR009001 -
Vimu11g03799 787 MobiDBLite consensus disorder prediction 281 298 - -
Vimu11g03799 787 Gene3D Translation factors 677 786 - -
Vimu11g03799 787 SMART zf_4 47 71 IPR001876 -
Vimu11g03799 787 Pfam Elongation factor Tu GTP binding domain 359 574 IPR000795 GO:0003924|GO:0005525
Vimu11g03799 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 601 IPR027417 -
Vimu11g03799 787 CDD HBS1-like_II 586 670 - -
Vimu11g03799 787 Pfam Elongation factor Tu domain 2 607 669 IPR004161 GO:0005525
Vimu11g03799 787 PRINTS GTP-binding elongation factor signature 419 427 IPR000795 GO:0003924|GO:0005525
Vimu11g03799 787 PRINTS GTP-binding elongation factor signature 360 373 IPR000795 GO:0003924|GO:0005525
Vimu11g03799 787 PRINTS GTP-binding elongation factor signature 500 509 IPR000795 GO:0003924|GO:0005525
Vimu11g03799 787 PRINTS GTP-binding elongation factor signature 439 449 IPR000795 GO:0003924|GO:0005525
Vimu11g03799 787 PRINTS GTP-binding elongation factor signature 455 466 IPR000795 GO:0003924|GO:0005525
Vimu11g03799 787 PANTHER TRANSLATION FACTOR 354 782 - -
Vimu11g03799 787 MobiDBLite consensus disorder prediction 207 256 - -
Vimu11g03799 787 FunFam Translation elongation factor EF-1 583 673 - -
Vimu11g03799 787 SUPERFAMILY Translation proteins 579 673 IPR009000 -
Vimu11g03799 787 FunFam elongation factor 1-alpha isoform X4 677 786 - -
Vimu11g03799 787 Pfam Elongation factor Tu C-terminal domain 675 782 IPR004160 -
Vimu11g03799 787 Gene3D Translation factors 584 673 - -
Vimu11g03799 787 Gene3D - 347 581 IPR027417 -
Vimu11g03799 787 CDD EF1_alpha 360 579 - -
Vimu11g03799 787 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Vimu11g03799 787 MobiDBLite consensus disorder prediction 281 340 - -
Vimu11g03799 787 CDD HBS1_C_III 674 782 - -
Vimu11g03799 787 MobiDBLite consensus disorder prediction 307 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03799 Vimu-Chr11 60054418 60061250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03799 158 785 Eukaryotic Initiation Factors Gene Family AT5G10630 61.146 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03799 K14416 - gmx:100801724 1319.68