Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03796 ATGGGAATTCAGGGGTTTTTGCCGCTATTGAAATCGATTATGGTTCCAATCAATATCAAGGACTTGAAGGGTTGTTCAGTAGCGGTAGACACCTATTCTTGGCTCCACAAAGGTGCCCTTTCTTGCAGCACCGAACTCTGCAAAGGGATACCCACTACCAGGCACATTGAGTATTGCATGCACAGAGTCAATTTGCTGCGCCATTATGGGGTTAAGCCCATTCTAGTGTTTGATGGAGGACTTCTGCCAATGAAAAGTGAACAAGAGATCAAGCGTGCCAGGGTTAGAAAGGATAATTTTGCACGTGCAGTTGAGCACGAGTCAGATGGAAATTCAACTGCTGCTTATGAGTGCTACCAGAAAGCAGTTGATATTTCTCCCCAAGTTGCTCGTGAACTAATTCAGGAGAATGTGCAGTATATTGTTGCTCCTTATGAGGCAGATGCCCAGCTGACATTCTTGGCAATTAGTGGACAAGTTGATGTAGTTATAACTGAAGATTCTGATCTTATACCATTTGGCTGCTCTAGAATTCTCTTTAAAATGGACAAGTTTGGTCAAGGAGTTCAGTTCCAGTACTCTATGCTACAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGGTTCTTGAAATGTGTATTTTAAGTGGCTGTGACTATCTTCAGTCCTTGCCAGGTATGGGTCTTAAAAGAGCCCATGCAAGCATAAAAAAATTTGGAAGTTATGACAAGGTACTTAAGCACTTGAGATACAGTGGAGTTTCTGTGCCTCCCTTGTATGAAGAGTCATTCAAGAAGGCTATACGTACTTTCCAATATCAACGGGTTTATGATCCAATTAATGAAAATATTGTCCATTTGTCTAATATACCAGATGATATTGGTGACGAGTTAGACTTTTTAGGCCCATATCCTTCATTTTTAATTAACTTTTCCTTAGCCATGAAAGGTGTTGTTTCACTTGAAGCAAAAAGGAAATTCAGAGCACCTCGGGTGTCCCCTACAGCTGCTAATGAAACAAAGAACCTTACTGCATCAATCATTGACTATGAGAATTTGGCCAATGCCCGTCATCCTAATAGCCATACTGAATGTGATTCTGCCAAAAAACTATCTGAATTTACAGAGTCTCCATATCATGTTTCTATGATCCATGAGGAGAAGAAAAACCCTGAACATGCAGTACTGCAACAGCCTAGGCAGCCTATTCATAAACCATGTTTGGGTTTGCATAAGGAGCATGGGAACACTAATATCCAAGACACAGTAGAAGAGAAAACCAGGGAGGTATCTGAAAAGGTTATTGTCAGAAGTGCTTATTTTCAGCACAAGCAAGTGGACAAGAATGCTTGTGACGAAAAACTTGAGTACCAATCCTCTGGCATTGTCACTGATGAGAGAAAAAAAGCCATATCTGACAGTGATTTATGTAATGATCATTTAAAGAATAAAGACCAGGGACTCCATGACAAAGATGAAGGAAAAACCAGGGAGACAACAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAAACAAGTGGAAAAGAATGTTCGTGACGAGAAACAAGAGTACCAGTCCTCTGGCATTGTCATTGATGAGAGAAAAAATGCCATATCTGACAGCTATTTATGTAATAACCATTTGAAGAATAAAGATCAGGGATTCCATGACATAGTTGAAGGTAAAACCAGGGAGACAACTAGAAAGGTAATTGTAAGGAGTCCTTATTTTCAGCACAAGCAAGTAGGAAAGAATGTTTGTGATGAAAAACAAGATTACCTGTCCTCTGGCATAGTCATTGACAACAGAAGTGCCACGTCTAACAGTGATTTATGTAACAACCATTTGAAGAATAAAGACTTGAAAAGGAAGTTTTCTCCTAATGACAATATTCAAAATGAAAATTTGCATCCTAGGAAAATGCAGCGTGCTTCACCTCCTCAAAGTAACGGTTGCTGTGATCACGACGTTGAAGGACCAGTTACGGAGAATAATGGCGAGGAAGAAAAATTCGGGACAAACATTTCCCATTTGGGTCAGTATTCAGAAATAGCTGAGAAGTCTATGGAAAGATTTGTCTCTGTGATATCATCCTTTAGGTGCACTTCTGGTACTCGTGTCAGTGGTCTCCGAGCTCCCCTGAAAGATGTTCGAAACACTTCCGATAATAGGCCAAAAACTGCGGACTTTGGACAATATGCATATGTGCCAAAGCACACAAAGATTAGAAGAATAGCTCCTGGGAATTAA 2265 0.4009 MGIQGFLPLLKSIMVPINIKDLKGCSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCMHRVNLLRHYGVKPILVFDGGLLPMKSEQEIKRARVRKDNFARAVEHESDGNSTAAYECYQKAVDISPQVARELIQENVQYIVAPYEADAQLTFLAISGQVDVVITEDSDLIPFGCSRILFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMVLEMCILSGCDYLQSLPGMGLKRAHASIKKFGSYDKVLKHLRYSGVSVPPLYEESFKKAIRTFQYQRVYDPINENIVHLSNIPDDIGDELDFLGPYPSFLINFSLAMKGVVSLEAKRKFRAPRVSPTAANETKNLTASIIDYENLANARHPNSHTECDSAKKLSEFTESPYHVSMIHEEKKNPEHAVLQQPRQPIHKPCLGLHKEHGNTNIQDTVEEKTREVSEKVIVRSAYFQHKQVDKNACDEKLEYQSSGIVTDERKKAISDSDLCNDHLKNKDQGLHDKDEGKTRETTRKVIVRSAYFQHKQVEKNVRDEKQEYQSSGIVIDERKNAISDSYLCNNHLKNKDQGFHDIVEGKTRETTRKVIVRSPYFQHKQVGKNVCDEKQDYLSSGIVIDNRSATSNSDLCNNHLKNKDLKRKFSPNDNIQNENLHPRKMQRASPPQSNGCCDHDVEGPVTENNGEEEKFGTNISHLGQYSEIAEKSMERFVSVISSFRCTSGTRVSGLRAPLKDVRNTSDNRPKTADFGQYAYVPKHTKIRRIAPGN 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03796 754 CDD H3TH_EXO1 210 281 IPR037315 GO:0003677|GO:0035312
Vimu11g03796 754 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Vimu11g03796 754 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 521 IPR006084 -
Vimu11g03796 754 SMART xpgineu 134 204 IPR006086 GO:0004518
Vimu11g03796 754 CDD PIN_EXO1 1 198 IPR044752 GO:0046872
Vimu11g03796 754 FunFam exonuclease 1 205 277 - -
Vimu11g03796 754 SMART xpgn3 1 99 IPR006085 GO:0004518
Vimu11g03796 754 MobiDBLite consensus disorder prediction 627 656 - -
Vimu11g03796 754 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 207 309 IPR036279 -
Vimu11g03796 754 SMART HhH_4 209 242 IPR008918 GO:0003677|GO:0003824
Vimu11g03796 754 Gene3D - 205 277 - -
Vimu11g03796 754 SUPERFAMILY PIN domain-like 2 222 IPR029060 -
Vimu11g03796 754 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Vimu11g03796 754 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 133 150 IPR006084 -
Vimu11g03796 754 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 154 174 IPR006084 -
Vimu11g03796 754 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vimu11g03796 754 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Vimu11g03796 754 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 212 227 IPR006084 -
Vimu11g03796 754 Gene3D - 1 203 - -
Vimu11g03796 754 MobiDBLite consensus disorder prediction 633 654 - -
Vimu11g03796 754 Pfam XPG I-region 137 222 IPR006086 GO:0004518
Vimu11g03796 754 FunFam Exonuclease 1, putative 1 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03796 Vimu-Chr11 60024445 60035098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03796 1 260 Core DNA Replication Machinery Family AT5G26680 27.798 5.21e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03796 K10746 - gmx:100798062 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03796 11 60024445 60035098 Vimu11g03796 11 60024445 60035098 ECH