Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03795 ATGACATACCATTTCGAGCTCTTACGAGCTCAACAATATACCTTCTTAGATGTGACCAGCAGCATTACAGTTCGAGTTGTTCTAAGAATCATATTCTCAAAACTCAATCGGAGTGTGCAACAATTCCACCTTTTGAGTGAGAATGCTGTCTTTGTAGGAATCAAACAAGTGAAAAGACTTGACATTCTTGAGTCCAAGCGCATGCCAGCGAACAATTATAACTGCGTCCCTTTAACACCAAGGTCTAGATTGGAAAGGCTTCTGAGGGAAAGAGAGCTAAGGAAGTCCTTCAAGAATCAACCAACTGATGAAGCAAGAGATGGGAGCAAAGAGGGAGAACAATCTTCTGGTGATTCAATAAGTGAGAATGAAATCTCAGGTGTTCATAAAGAGGAAGAAGCCACGGAAACGAATAGGCAAGATGAGAGGCCAGGCAAACAACGTTTGTTGGTGGTAGCTAACAGGTTGCCAGTTTCTGCTGTAAGAGATGGTGTGGAGTCATATCATCTTGAGATCAGTGTAGGAGGGCTAGTCAGTGCACTTCTAGGCAAGAAAAAGTTTGAATGGATTGAACTTTTCTATTTTCAAAGTGAAGGTTGTATGAAGCTTGTTGTTTCTGTTGAAGGTGTAAAGGAGTTTGATACCAGATGGATTGGGTGGGCTGGCGTGAATGTGCCTGATGAGGTTGGACGGAGAGCATTGACTAAAGCTTTGGCTGAAATGCGGTGTATTCCAGTATTTCTTGATGAGGAGATAGTTAATCAGTACTATAATGGCTACTGCAACAACATCTTGTGGCCTCTATTTCATTACCTTGGGCTTCCACAAGAAGATCGACTTGCTACCACTCGTACTTTCCAATCCCAATTTGATGCATATAAGACGGCAAACCAAATCTTTGCTGATGTAGTAAATATGCATTATGAGGAAGGAGATGTTGTTTGGTGCCATGATTACCACCTAATGTTCCTTCCAAAATGTTTAAAGGAGCGCAACGACAAAATGAAAGTTGGTTGGTTTCTCCATACACCCTTTCCTTCCTCAGAAATACATAGGACTCTACCATCCAGAACAGAGCTTTTGAGATCAGTCATTGAAGCTGACCTTGTGGGATTCCATACCTATGATTATGCAAGGCATTTTGTTAGTGCTTGTACTCGTATTCTTGGGCTTGAGGGCACACCTGATGGAGTAGAAGATCGAGGGAAGCTAACCCGTGTGGCTGCGTTTCCTATTGGGATTGACTCTGAGAGATTCATTCAAGCCCTTGAACTCCCTGAAGTCCAGGCGCACATGAAAGAACTGAAAGAAAGATTTGCAGGCCGAAAGGTAATGTTGGGCGTCGATCGTCTTGATATGATAAAAGGAATTCCTCAGAAAATATTGGCATTTGAAAAGTTCCTCGAGGAGAATTCCCACTGGCGTGATAAAGTTGTCTTGCTGCAAATTGCTGTACCTACTAGAAAAGATGTTCCTGAATACCAAAAGCTTGCAAGCCAAGTGCATGAGATTGTAGGACGCATCAATGGAAGATTTGGAACACTTACAGCTGTTCCACTACACCATTTGGATCGATCACTTGACTTTCATGAATTATGTGCACTCTATGCTGTAACTGACGTTGCACTTGTTACATCTTTGAGAGATGGAATGAATCTTGTCAGCTATGAGTTTGTTGCGTGCCAAGCATCCAAGAAGGGGGTTCTCATTTTAAGTGAGTTTGCTGGTGCAGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAATCCTTGGAACATAACAGAGGTTGCTGCTTCTATTGGTTATGCGTTGGATATGCCAGCCGATGAAAGAGAAAAACGACATCAGTTTAATTTCAGACATGTGAAGACTCACACATCACAGGAATGGGCTGCAACTTTTGTGAGTGAACTAAATGATACCATTGTTGAAGCTCAGCTTAGGACAAGACAAGATCCTCCATTGCTTCCCAACAAAGTGGCAGTTGACTGTTATAAAAAATCCAGTAACCGATTAATCATACTGGGTTTCAATGCCACTTTGACTGAACCAGTGGATGCCCTTGGACGGGCTGGTCAAATTAGAGAACTGGAACCTAAATTACACCCAAATCTGAAAGGACCTTTAAAGAAGTTATCCGATGATCCACAGACAACAATAGTACTTCTCAGTGGGAGCAATCGAGCAGTCCTGGACAAAAACTTCAGTGAATTTAATATGTGGTTGGCAGCGGAAAATGGGATGTTTCTGCGACTCACTTCAAGTGAGTGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGCGTGAAGCATGTTTTTGAGTATTTTACTGAAAGGACTCCCCGGTCTCATTTTGAGCTTAGGGAGACTTCAATAGTATGGAATTACAAGTACGCAGATGTTGAATTTGGAAAGATTCAAGCAAGAGATTTGCTTCAGCATCTGTGGACAGGACCAATATCAAATGCATCTCTTGATGTTGTCCAAGGTGGTCGATCAGTTGAGGTGCGCACAGTTGGTGTGTCAAAGGGAGCAGCTATTGATCGTATCCTTGGAGAGATAGTTCATAACAAAGGCATGACGGCACCAATTGACTATGTGCTATGCATTGGGCACTTTCTAGCCAAGGACGAAGATGTGTATAAATTTTTTGAGCCGGAGCTTCCTTGTGAATCACCTTCAGTACCAAGAGCTATGCTATCCAAATCCAAGTCATACAGACCATCATCTTTGCCAAAATTTGCAGCCAACAAAGCCGCGACAAAGGCTGCTCAGTACAAGAAACAACGTTCGTTGTCAAGCATAGAAAAGAGAGAAATTGAACTGAGAGCAACATATCGTGATAGAATATCACAGCATGAAGGTTCCTCGGTGCTTGATCTAAAAGGTGATAATTACTTCTCTTGTGTTGTTGGACGGAAAAGATCAAGTGCACGTTACCATCTTAAAACCTCAGATGATGTTGTCAACCTCTTAAGTGATTTGGCAGAACATTCTTAA 3012 0.4226 MTYHFELLRAQQYTFLDVTSSITVRVVLRIIFSKLNRSVQQFHLLSENAVFVGIKQVKRLDILESKRMPANNYNCVPLTPRSRLERLLRERELRKSFKNQPTDEARDGSKEGEQSSGDSISENEISGVHKEEEATETNRQDERPGKQRLLVVANRLPVSAVRDGVESYHLEISVGGLVSALLGKKKFEWIELFYFQSEGCMKLVVSVEGVKEFDTRWIGWAGVNVPDEVGRRALTKALAEMRCIPVFLDEEIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRTFQSQFDAYKTANQIFADVVNMHYEEGDVVWCHDYHLMFLPKCLKERNDKMKVGWFLHTPFPSSEIHRTLPSRTELLRSVIEADLVGFHTYDYARHFVSACTRILGLEGTPDGVEDRGKLTRVAAFPIGIDSERFIQALELPEVQAHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSHWRDKVVLLQIAVPTRKDVPEYQKLASQVHEIVGRINGRFGTLTAVPLHHLDRSLDFHELCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALDMPADEREKRHQFNFRHVKTHTSQEWAATFVSELNDTIVEAQLRTRQDPPLLPNKVAVDCYKKSSNRLIILGFNATLTEPVDALGRAGQIRELEPKLHPNLKGPLKKLSDDPQTTIVLLSGSNRAVLDKNFSEFNMWLAAENGMFLRLTSSEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFELRETSIVWNYKYADVEFGKIQARDLLQHLWTGPISNASLDVVQGGRSVEVRTVGVSKGAAIDRILGEIVHNKGMTAPIDYVLCIGHFLAKDEDVYKFFEPELPCESPSVPRAMLSKSKSYRPSSLPKFAANKAATKAAQYKKQRSLSSIEKREIELRATYRDRISQHEGSSVLDLKGDNYFSCVVGRKRSSARYHLKTSDDVVNLLSDLAEHS 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03795 1003 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 203 639 IPR012766 GO:0003825|GO:0005992
Vimu11g03795 1003 CDD HAD_TPP 672 891 - -
Vimu11g03795 1003 Gene3D Glycogen Phosphorylase B; 421 624 - -
Vimu11g03795 1003 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 134 1001 IPR001830 GO:0003824|GO:0005992
Vimu11g03795 1003 Pfam Glycosyltransferase family 20 150 639 IPR001830 GO:0003824|GO:0005992
Vimu11g03795 1003 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 763 843 - -
Vimu11g03795 1003 Pfam Trehalose-phosphatase 701 915 IPR003337 GO:0003824|GO:0005992
Vimu11g03795 1003 Gene3D - 763 843 - -
Vimu11g03795 1003 Gene3D Glycogen Phosphorylase B; 139 420 - -
Vimu11g03795 1003 Gene3D - 700 857 IPR023214 -
Vimu11g03795 1003 SUPERFAMILY HAD-like 672 999 IPR036412 -
Vimu11g03795 1003 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 147 642 - -
Vimu11g03795 1003 MobiDBLite consensus disorder prediction 95 146 - -
Vimu11g03795 1003 MobiDBLite consensus disorder prediction 124 146 - -
Vimu11g03795 1003 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 421 624 - -
Vimu11g03795 1003 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 195 420 - -
Vimu11g03795 1003 MobiDBLite consensus disorder prediction 95 113 - -
Vimu11g03795 1003 CDD GT20_TPS 148 639 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03795 Vimu-Chr11 60006414 60017676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03795 68 1001 Trehalose Biosynthesis Gene Families AT1G78580 71.547 0.0 1369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03795 K16055 - gmx:100816642 1608.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03795 11 60006414 60017676 Vimu11g03795 11 60006414 60017676 ECH