Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03794 ATGAAGTTCAATCCTAGGGTTTCCTCTAGTCAGCGCAAGAGCCGCAAGGTCAATTTCACGACACCGTCGAGTGTCCGCCGCGTGCTAATGAGCGTGCCGCTCTCAACAAATCTCCAGTCCAAATACAACGTGTGTTTCATTCCGGTTCGGAAGGATGACGAGGTGCAAGTGGTCCGGGGAACCTACAAGGGTCACGAGGTGGAATCTTCACCGACTACAGGATCCCTTTTTTATGCTTCACCAAAAAGTCTGCGGGAAATCGAAGCAGGGACGACAACGAACAAAGTGAGAGCTACTCCAGACCGTGTACGTATCGTGACGGCTCGATGCCACGAATGA 339 0.5192 MKFNPRVSSSQRKSRKVNFTTPSSVRRVLMSVPLSTNLQSKYNVCFIPVRKDDEVQVVRGTYKGHEVESSPTTGSLFYASPKSLREIEAGTTTNKVRATPDRVRIVTARCHE 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03794 112 SUPERFAMILY Translation proteins SH3-like domain 8 66 IPR008991 -
Vimu11g03794 112 NCBIfam 50S ribosomal protein L24 8 67 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vimu11g03794 112 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 67 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vimu11g03794 112 Gene3D - 1 109 IPR014722 -
Vimu11g03794 112 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 105 IPR005756 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03794 Vimu-Chr11 60005419 60005757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03794 1 66 Cytoplasmic Ribosomal Protein Gene Family AT5G67510 74.242 1.57e-30 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03794 K02898 - gmx:100819391 103.99