Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03789 CTTGTCTTTTTTACGAGGACAATCAATAAGATGATGATGTTTTACTTGATTCAGCTTCCAGTCATGGCTTTTCCAAACCAATCCATGTCATCGGTTTCTCCCGAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAGTCGACAAGTTACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTGATAGTCTTTTCAAACCGTGGCCGCCTCTATGAATATGCTAATAACAGTGTCAAAGCTTCAATTGAGAGATACAAGAAAGCAAGTTCAGATTCATCTAATGGTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCTGACAAACTGCGAGTTCAAATCAGCAATCTGCAGAATCACAATAGGCAAGTTGGATATTCATGTATTAAGATTACGATACTAGAAAAGCAAATGATGGGTGAGGCTTTGAGCGATATGGATGCCAAGGATCTCAAAAACCTAGAGACTAAATTAGAAAAAGGAATTAGCAGAATTCGATCAAAGAAGGAGACAGACTTGCACAATAACAACCAGCTTCTTAGAGCAAAGATGGCTGAAAGGGAAAGGAATGAGCATAATGTTAACGTGTTGTCAGGAAGCACAAGCTACGAATCAATGCAATCTCAGTTTGATTCTCGTGGCTTCTTCCAAGTCACTGGATTACAACCCAATAATAACCAGTATGCTGGACAAGACCACATGTCTCTCCAATTTGTGTAA 792 0.4104 LVFFTRTINKMMMFYLIQLPVMAFPNQSMSSVSPERKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDSSNGGSASEANAQFYQQEADKLRVQISNLQNHNRQVGYSCIKITILEKQMMGEALSDMDAKDLKNLETKLEKGISRIRSKKETDLHNNNQLLRAKMAERERNEHNVNVLSGSTSYESMQSQFDSRGFFQVTGLQPNNNQYAGQDHMSLQFV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03789 263 PRINTS MADS domain signature 60 75 IPR002100 GO:0003677|GO:0046983
Vimu11g03789 263 PRINTS MADS domain signature 40 60 IPR002100 GO:0003677|GO:0046983
Vimu11g03789 263 PRINTS MADS domain signature 75 96 IPR002100 GO:0003677|GO:0046983
Vimu11g03789 263 Gene3D - 50 135 IPR036879 GO:0003677|GO:0046983
Vimu11g03789 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 47 94 IPR002100 GO:0003677|GO:0046983
Vimu11g03789 263 SUPERFAMILY SRF-like 39 111 IPR036879 GO:0003677|GO:0046983
Vimu11g03789 263 Coils Coil 124 144 - -
Vimu11g03789 263 Coils Coil 175 195 - -
Vimu11g03789 263 SMART madsneu2 38 97 IPR002100 GO:0003677|GO:0046983
Vimu11g03789 263 ProSitePatterns MADS-box domain signature. 40 94 IPR002100 GO:0003677|GO:0046983
Vimu11g03789 263 ProSiteProfiles MADS-box domain profile. 38 98 IPR002100 GO:0003677|GO:0046983
Vimu11g03789 263 PANTHER SERUM RESPONSE FACTOR HOMOLOG 38 219 - -
Vimu11g03789 263 Pfam K-box region 121 216 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu11g03789 263 CDD MADS_MEF2_like 39 115 IPR033896 GO:0000977|GO:0045944
Vimu11g03789 263 FunFam agamous-like MADS-box protein AGL11 50 133 - -
Vimu11g03789 263 ProSiteProfiles K-box domain profile. 124 233 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03789 Vimu-Chr11 59948385 59953101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03789 36 263 MADS-box Gene Family AT3G58780 55.600 3.06e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu11g03789 K-box 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03789 K09264 - gmx:100776263 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03789 11 59948385 59953101 Vimu11g03789 11 59948385 59953101 ECH
Vimu11g03789 11 59948385 59953101 Vimu2g00848 2 5218985 5227036 PCT