Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03775 ATGGATGAGGCACTGGGTAGTTCATGTGCCCTGCCCCCTTTCCTGGCGAAGACTTATGAGATGGTTGATGATCCTTCCACGAATTCAATTGTTTCGTGGAGTGCCTCTAGTAAAAGTTTCGTTGTGTGGAATCCTCCAGAATTTGCTAGGGATTTGCTGCCTAGATTCTTTAAGCACAACAATTTCTCGAGTTTCATCAGGCAGCTCAACACATATGTAAGCAAATTTGATCTTGCCATCTTGGAATTGTTGATAAAAATTGACCCGGAACAATGGGAATTTGCCAATGATGATTTTGTAAGAGGGCAACCTCATCTTATGAAGAACATTCATAGACGAAAGCCGGTTCATAGCCATTCTTTGCAGAATCTCCAAGTACAGGGCCCATTAGGGGAATCAGAAAGGCAGAGTTTTACTAATGAAATAGAGAAGCTTAAACATGATAAAGAGCGACTTCTAGCCGAATTGCAGAAATTTCAGCACGAGTGGCAGACATACGAGATACAAGTACATTGCTCAAACGATAGGTTGGAAAAGTTAGAACAAAAGCAACACAAGATGGTTTCTTCGGTTTCTCATGTATTGCAGAAACCTGTGATTGCTGTAAATATCTTGCCTCTGACCGAAACTATGGATAGAAAACGAAGGTTACCGAGAAGTGGCCACTACTATGAAGAAGCTAGTATTGAAGATGCTATTGAAACTTCTCAAATGTTACCAAGAGAAAATGCAGATAATACCGCTGTCTTGACATTAAATGTGGAGCGATTGGATCAGCTTGAATCATCCGTGGCATTTTGGGAGGCTATTGCACATGATATTGGAGACAACTTCGCCCAAATTCAGTCAAACATGGATGTTGATGAATCTACAAGTTGTGCTGATAGTCCATCCATATCTTGTGCTCAATTAGATGTTGAAATTCGGCCTAAATCATCTGGAATTGATATGAACTCTGAGCCAACTGTAGCTGCTGTCCCAGATCCAGTTGCATCAAAAGATCAACCTGCAGGAATCACTGTCGCAGCGACTGGAGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCAGAAACACAGGAAGTGCAGTCAGAAAGAAAGGATTCTGATGGCAGAAAGAATGAAGGGAAACCCAATGACCTTAGCAAATTTTGGTGGAATATACGGAGTGCAAATAATCATTCAGAACCGATGGGGCATGTTGGTCAGGCAGAGAAAACTTAG 1239 0.4173 MDEALGSSCALPPFLAKTYEMVDDPSTNSIVSWSASSKSFVVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYVSKFDLAILELLIKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQVQGPLGESERQSFTNEIEKLKHDKERLLAELQKFQHEWQTYEIQVHCSNDRLEKLEQKQHKMVSSVSHVLQKPVIAVNILPLTETMDRKRRLPRSGHYYEEASIEDAIETSQMLPRENADNTAVLTLNVERLDQLESSVAFWEAIAHDIGDNFAQIQSNMDVDESTSCADSPSISCAQLDVEIRPKSSGIDMNSEPTVAAVPDPVASKDQPAGITVAATGVNDVFWEQFLTEDPGASETQEVQSERKDSDGRKNEGKPNDLSKFWWNIRSANNHSEPMGHVGQAEKT 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03775 412 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g03775 412 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g03775 412 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g03775 412 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 230 IPR027725 -
Vimu11g03775 412 Pfam HSF-type DNA-binding 14 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g03775 412 Gene3D - 7 114 IPR036388 -
Vimu11g03775 412 SUPERFAMILY "Winged helix" DNA-binding domain 11 113 IPR036390 -
Vimu11g03775 412 FunFam Heat shock transcription factor 1 7 114 - -
Vimu11g03775 412 MobiDBLite consensus disorder prediction 364 384 - -
Vimu11g03775 412 MobiDBLite consensus disorder prediction 356 388 - -
Vimu11g03775 412 Coils Coil 135 162 - -
Vimu11g03775 412 SMART hsfneu3 10 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03775 Vimu-Chr11 59778473 59779807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03775 7 412 HSF AT4G18880 50.000 1.96e-115 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu11g03775 HSF_DNA-bind 2.6e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03775 K09419 - gmx:100798004 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03775 11 59778473 59779807 Vimu11g03775 11 59778473 59779807 ECH
Vimu2g00824 2 5048089 5049385 Vimu11g03775 11 59778473 59779807 ECH
Vimu11g03775 11 59778473 59779807 Vimu2g00824 2 5048089 5049385 PCT