Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03774 ATGAAGTGGGGTGGAAAAAAACCTTCTCCTTCTCCTTCTTCCTCTTCTAGGCCTTCTTTTGCATCTCATGTGTCTCCTTTTTCATGGCTTTCCAAGTTCAAGCATATGAGAATAAACTCAGACCCAAAACCTGCCGCATTGAAGCAAAATGCAAAGCAGAATTCAACTCCATCAGATACCTCACCCCATTATAATAGAGGCAGATTTTATGGAGGGGATGATGAGGCTTTCTGGAGACTCTCATTTGGTGAAGAGGGTAATGAGCATAGAAAAAGTGATGATATTCTGAAGCCGGTAAAGTACAATTTGGATGCTGAACATGTCATTCCATCCTCAAGTTTCCCCGGTGGATTGAATAATGCTAAAAGACAAGGTAGAAGAGAAGTCACTCAGAAGTTGAAGCAGAAGGACACTGAATTGAGAGAAGAAACAACATTGCTGAATGAAGCTGCAAGAAGTGTAAAAGAACTCGAATCCTTGAGAAGGAGATATGAGAGGAAAGCACAAAGAGTTTTGCAAGAGCAGCTCTTGAAATTGGAAAAGGCAGAAGAGGAATCTCAGTTTGCATCAAGTCCGTTCTTAGAAAATGATGTGCAGCAATATGAGTCACCCAGAACAATTTGCACACCAAGGAAGCATTTGTTTGTAGATTCAAAGAGTTCTGGCCTTGGATATCTCAGAGAAGCCCGAGTAAGTAGTCCCCAATTGGATTCTGAGTGGCATAATTTGAAACAAACTGAGGAGTTGAAATTGAAAGCAAAGAGTAACCAACAAATGCAATCGCTTCATGCGAGCAGAGAAAACCAGAGGAGGAAACCAAAGCACAACTCCAAGGTTAGAGTACACTCTCCAAGAATGGGTTCCAAAGTTGAAGTCCGCAAAATAAAGGCAATAGAAGAGAAGAAGAAAGCAAAACTGAAGATGAAGAAAGAAGAGGAAATTGTGGAGGAAACAGAAGGGTTAGATAGCTTTGCGGTGGTGAAATGTTCTTTGGATCCACAGAAGGATTTCAGAGAATCAATGATTGAGATGATCACAGAGAAACAGATCAGCCAGCCAGAAGAAATGCAAGATCTGCTAGCATGTTATCTGACTTTGAATTCTAATGAGTACCATGATCTCATCATCCAAGTGTTCAAGCAAGTATGGTTGTGCATGAGCCGAGCCAGCTCGGGTATTCAATCACACAAGCAATGCTGTTGTTGTGATTAA 1212 0.4125 MKWGGKKPSPSPSSSSRPSFASHVSPFSWLSKFKHMRINSDPKPAALKQNAKQNSTPSDTSPHYNRGRFYGGDDEAFWRLSFGEEGNEHRKSDDILKPVKYNLDAEHVIPSSSFPGGLNNAKRQGRREVTQKLKQKDTELREETTLLNEAARSVKELESLRRRYERKAQRVLQEQLLKLEKAEEESQFASSPFLENDVQQYESPRTICTPRKHLFVDSKSSGLGYLREARVSSPQLDSEWHNLKQTEELKLKAKSNQQMQSLHASRENQRRKPKHNSKVRVHSPRMGSKVEVRKIKAIEEKKKAKLKMKKEEEIVEETEGLDSFAVVKCSLDPQKDFRESMIEMITEKQISQPEEMQDLLACYLTLNSNEYHDLIIQVFKQVWLCMSRASSGIQSHKQCCCCD 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03774 403 Coils Coil 140 185 - -
Vimu11g03774 403 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 191 387 IPR038933 GO:0045892
Vimu11g03774 403 ProSiteProfiles OVATE domain profile. 326 385 IPR006458 -
Vimu11g03774 403 NCBIfam uncharacterized plant-specific domain TIGR01568 325 385 IPR006458 -
Vimu11g03774 403 MobiDBLite consensus disorder prediction 253 286 - -
Vimu11g03774 403 MobiDBLite consensus disorder prediction 46 63 - -
Vimu11g03774 403 MobiDBLite consensus disorder prediction 268 282 - -
Vimu11g03774 403 MobiDBLite consensus disorder prediction 39 68 - -
Vimu11g03774 403 MobiDBLite consensus disorder prediction 1 23 - -
Vimu11g03774 403 Pfam Transcriptional repressor, ovate 330 386 IPR006458 -
Vimu11g03774 403 Coils Coil 294 321 - -
Vimu11g03774 403 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03774 Vimu-Chr11 59755317 59756528 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu11g03774 Ovate 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03774 - - gmx:106798868 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03774 11 59755317 59756528 Vimu11g03774 11 59755317 59756528 ECH
Vimu11g03774 11 59755317 59756528 Vimu2g00823 2 5040658 5041863 PCT