Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03772 ATGGCTTCAGCGGCTATATTTTCGTCGCTTCGACGGCGCCGGTCGCCATCGCTGGAGGCGTTTCTTGTGCCAGTTGACCTCTCTGAGGTGGCGCTGCTGGAGACACTTATCTCCGTCTCCGGAGACGTCGTATCCTGCTTCTCCGACAATCGGTTCCCCTTCCAGCGCCGGAACTCGCGTGCCCTTGTAGGAAAAGTAGAGATTTTCCGGTCAATGTTAGAGTGCTTGAGAGACTCCGCTGACGGTGGCGTTCTAACCCCCACGGCGGTGCTGTGCTTAAAGGAGCTTTATTTGCTACTGTATCGCTCTAAGATTCTTCTTGATTACTGTGCCCGATCGAGCAAGCTGTGGCTCTTGCTTCAGAACCATTGTGTGTCTGGTCACTTCCATGACTTGTGTCAAGAATTTTCGACCCTTTTGGATGTTTTTCCTGTTGGAGAGATTGGGCTCAGTGATGACGTTAGGGAACAGGTTGAGTTGTTGCAGAGACAGTCCAAAAGGGCTAAGTTGTTCGTAGATAAGAAAGATGACGCCCTTAGGATAAGGTTCTTTTGGTTTCTGAATGAATTTGAAAGTGGGAGGGTTCCTGATTCTAAGGACTTGAGGTGTTTCTTTGTTGATAAGTTGCAGATGCTCGATGCTAAGAGTTGTAGGGTGGAGGTTGAGGCCTTGGAGGAGCAGATTGTGAACCACGAGGGTGATGTTGAGCCAACAGTTCCTGTGCTTAATGGGATGGTGGCTATCACAAGGTATTGTAGGTTTTTGTTATTTGGGTTTGAGGAAGAATTGGAAGTTGAAAGTCAGAAGAGAGCGAGGAAGAGGTTGATTACCCAGGAAATTGCGGAAACGTTTTTTACGGTTCCTAAGGACTTTTGCTGTCCGATAACCTTGGACTTGATGTGTGATCCTGTAATAATTTCTACCGGTCAAACTTATGATAGGAGGTCTATATGGAGGTGGATGGAGGAGGGGCATTGCACTTGTCCCAAAACTGGGGTACTGCTTTCTCATAACAGGCTTGTTCCTAATCGTGCTCTTAGGAATTTGATTATGCAATGGTGCAGCGCACATGGAGTACCCTATGATCCACCTGAGGGGGTTGATCCATCAGTTGAGATGTTTGCATCAGCTTGTCCCTCCAAAGCTTCCCTTGTAGCTAACCGAGAGACGGCCATGCTTCTCATTCAGCAGCTTGCTGATGGGTCGCAAGTTGCAAAGACTGTGGCTGCCAGGGAGATAAGATTGCTGGCCAAAAATGGAAAGGAAAACCGTGCCTTCATTGCGCAAGCTGGGGCAATTCCTCATCTTAGGAAGTTGCTTTCCTCTCCTAATGCTGTTGCACAGGAGAATTCTGTGACTGCACTGCTCAATCTGTCCATTTTTGAAAGAAATAAGAGTATGATCGTGAAGGAAGGGTGTTTGGGGTCAATTGTTGAGGTGTTGCAATTCGGGCACACGACTGAGGCAAGGGAGAATGCTGCTGCAACATTGTTCAGCCTATCTGCTGTCCACGAGTATAAGAAACAAATTGCGGATAATGTGGGAGCTGTTGAAGCATTGGCATGGTTGTTGCAAGAGGGAACTCAAAGGGGGAAGAAGGATGCTGTCACAGCATTATTTAATCTCTCCACCCATACTGAGAATTGTTTGAGAATGATAGAGGCAGGGGCAGTGAAAGCTATGGTCTTGGCTTTGGGGAATGAAGGAGTTTCCGAAGAAGCAGCTGGTGCCTTGGCCTTGATTGTTCGGCAGCCTATTGGCGCCATGGCAGTTGTGAGGGAGGAAGCAGCAGTAGGTGGATTGATAGGAATTATGCGTTGTGGAACGCCAAGAGGTAAAGAGAATGCAGTTGCAGCTTTGCTGGAGCTGTGCAGGAGTGGTGGTGCAGCGGCAACTGAGAGGGTGGTTAGGGCGCCTGCCTTGGCCGGCTTGCTTCAAACCTTGCTTTTCACAGGGACAAAGAGGGCAAGAAGAAAGGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTGCATTATGGTGGATTGGGTGTGGGTTATGCATTTGCTAGCGATTCAGCTTCAACCAGGAATACTACAAGCTTTGTGAGTGATGTTTCACTTCCAATGTCCATTTCTGTTCCTGTTTTATGA 2145 0.4807 MASAAIFSSLRRRRSPSLEAFLVPVDLSEVALLETLISVSGDVVSCFSDNRFPFQRRNSRALVGKVEIFRSMLECLRDSADGGVLTPTAVLCLKELYLLLYRSKILLDYCARSSKLWLLLQNHCVSGHFHDLCQEFSTLLDVFPVGEIGLSDDVREQVELLQRQSKRAKLFVDKKDDALRIRFFWFLNEFESGRVPDSKDLRCFFVDKLQMLDAKSCRVEVEALEEQIVNHEGDVEPTVPVLNGMVAITRYCRFLLFGFEEELEVESQKRARKRLITQEIAETFFTVPKDFCCPITLDLMCDPVIISTGQTYDRRSIWRWMEEGHCTCPKTGVLLSHNRLVPNRALRNLIMQWCSAHGVPYDPPEGVDPSVEMFASACPSKASLVANRETAMLLIQQLADGSQVAKTVAAREIRLLAKNGKENRAFIAQAGAIPHLRKLLSSPNAVAQENSVTALLNLSIFERNKSMIVKEGCLGSIVEVLQFGHTTEARENAAATLFSLSAVHEYKKQIADNVGAVEALAWLLQEGTQRGKKDAVTALFNLSTHTENCLRMIEAGAVKAMVLALGNEGVSEEAAGALALIVRQPIGAMAVVREEAAVGGLIGIMRCGTPRGKENAVAALLELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASDSASTRNTTSFVSDVSLPMSISVPVL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03772 714 Gene3D - 529 654 IPR011989 -
Vimu11g03772 714 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Vimu11g03772 714 SUPERFAMILY RING/U-box 276 361 - -
Vimu11g03772 714 Coils Coil 214 234 - -
Vimu11g03772 714 CDD RING-Ubox_PUB 288 340 IPR045210 -
Vimu11g03772 714 FunFam RING-type E3 ubiquitin transferase 363 683 - -
Vimu11g03772 714 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Vimu11g03772 714 SMART arm_5 420 460 IPR000225 GO:0005515
Vimu11g03772 714 SMART arm_5 504 544 IPR000225 GO:0005515
Vimu11g03772 714 SMART arm_5 545 583 IPR000225 GO:0005515
Vimu11g03772 714 SMART arm_5 461 502 IPR000225 GO:0005515
Vimu11g03772 714 Gene3D - 367 528 IPR011989 -
Vimu11g03772 714 PANTHER U BOX DOMAIN-CONTAINING 58 670 - -
Vimu11g03772 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 557 IPR000225 GO:0005515
Vimu11g03772 714 FunFam RING-type E3 ubiquitin transferase 269 365 - -
Vimu11g03772 714 SUPERFAMILY ARM repeat 393 667 IPR016024 -
Vimu11g03772 714 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Vimu11g03772 714 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Vimu11g03772 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 361 IPR013083 -
Vimu11g03772 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03772 Vimu-Chr11 59731074 59734682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03772 1 714 U-box Gene Family AT1G29340 67.347 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03772 - - gmx:100797462 1270.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03772 11 59731074 59734682 Vimu11g03772 11 59731074 59734682 ECH
Vimu11g03772 11 59731074 59734682 Vimu2g00821 2 5030655 5032805 PCT