Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03756 ATGGATACTAACTTCACCAACATCAATGAACAAGAAGACTCTGATGGACCTCAAGAAACCATTGCCCACTCCCCTCCTTCTTCTTCTCTCTTCAACATCGATGGCGTTCTCACCTCCCCAACTTCCTCATCAAAGAGAAGGAGGGCAATACAGAAAAGGGTGGTGCAAATCCCGATCAAGGAGACAGAAGGGTGTAGGCTAAAAGGAGAGAGCAACACCCCGCCGTCGGATTCATGGGCATGGAGAAAGTACGGGCAGAAACCGATCAAGGGTTCGCCTTATCCAAGGGGGTACTACAGGTGTAGCAGCTCCAAGGGCTGTCCGGCACGGAAACAAGTGGAAAGGAGCTGCGTGGACCCCACAATGTTGGTCGTCACTTACTCTTCCGACCACAACCATCCCTGGCCAGCTTCAAGAAACAACACCAGGCCCACAAAGAAGCCCGAGCCCGAACCGGTAACGGACCCGGTCGAGCCGGAGCCGGAGCCGGAGCCGGAACCCGAGGAGAAGTTTTCAGAACTGGGTGGGGATGAATCCATGATCAGTACCGCGGATGAGATGGGGTGGCTGGGGGAGATGGAAACGACGACGTCCACTGTACTCGAAAGCCCGATTATTTCCGCAGGGTACCACGCTGACGTGGAGTCGGCGTTGCTGCCGATGAGGGAAGAGGACGAGCTGCTCTTCGCCGACCTCGGGGAGCTGCCGGAGTGCTCGGTCATGTTCCGGCAGGGGCTTCTGGCGGAGCGGCGGCGGTACACGGCGCCGTGGTGCGGGACCACAAGTTGA 789 0.5741 MDTNFTNINEQEDSDGPQETIAHSPPSSSLFNIDGVLTSPTSSSKRRRAIQKRVVQIPIKETEGCRLKGESNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSCVDPTMLVVTYSSDHNHPWPASRNNTRPTKKPEPEPVTDPVEPEPEPEPEPEEKFSELGGDESMISTADEMGWLGEMETTTSTVLESPIISAGYHADVESALLPMREEDELLFADLGELPECSVMFRQGLLAERRRYTAPWCGTTS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03756 262 MobiDBLite consensus disorder prediction 65 86 - -
Vimu11g03756 262 Gene3D WRKY domain 64 137 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g03756 262 MobiDBLite consensus disorder prediction 128 143 - -
Vimu11g03756 262 SMART WRKY_cls 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g03756 262 SUPERFAMILY WRKY DNA-binding domain 73 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g03756 262 MobiDBLite consensus disorder prediction 1 45 - -
Vimu11g03756 262 Pfam WRKY DNA -binding domain 77 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g03756 262 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 11 240 IPR044810 GO:0003700
Vimu11g03756 262 FunFam WRKY transcription factor 65 52 136 - -
Vimu11g03756 262 ProSiteProfiles WRKY domain profile. 76 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g03756 262 MobiDBLite consensus disorder prediction 128 178 - -
Vimu11g03756 262 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03756 Vimu-Chr11 59611532 59612777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03756 13 244 WRKY Transcription Factor Family AT1G29280 58.403 1.45e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g03756 WRKY 5.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03756 - - gmx:100127392 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03756 11 59611532 59612777 Vimu11g03756 11 59611532 59612777 ECH