Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03733 ATGGATCTGGAAAAAAGAAAAGGTAGTGGTGAAGTTTTGGATCATGTTGATGAAAGGGTGGGTGAGGATTTGAACCAATTGGTTGAAGGAAATGCAATTGATGCAGGAGGTGGACATAGCTTGGATGAAAGAGTTAGTGGAAGTGGGGAAGATGAGACTACAGAAGAGATGTGTAATGGTCTTGGTTTGAATGTGGAGCTAAAGGAGGGGCTGCAAGAAGTTAATGATCAGAACCTGGTTGGACCTCGAGAAATTAATGATACATTACATGGGGTTGATCAAGGAACCAGTTATAGTTCAAGAAATTTGGTTAGTGTGGAAGTACCTGAGACTTGTGTTGTAATAGATCCTTCCGCACAGATGGATTGTGTCAGTGGAGAAAATAGGAAACTGGAAGCAAAACCTAATGATTCAGGCTTGAGCAAGGTGTCCAAGAAAGTGACAAAAGGGGTGTCTGACATCGATAAAAATTCATGTGTAATTGATATAAACCGTGGCAGCTGCGACGGTTTTAGTGAGAATCTGGAAGGTGAATTGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTAGAAGCAGAAGCTGTTGGCACTGTAAGTAGTAGTACTACTACGAATACAGATTTGATTCAGCTTGGTTGTGCTTGTAAAGATGAATTAGGCATTGCTCACAGTCATTGTGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTAG 720 0.4167 MDLEKRKGSGEVLDHVDERVGEDLNQLVEGNAIDAGGGHSLDERVSGSGEDETTEEMCNGLGLNVELKEGLQEVNDQNLVGPREINDTLHGVDQGTSYSSRNLVSVEVPETCVVIDPSAQMDCVSGENRKLEAKPNDSGLSKVSKKVTKGVSDIDKNSCVIDINRGSCDGFSENLEGELICRICHLASGQPLEAEAVGTVSSSTTTNTDLIQLGCACKDELGIAHSHCAEAWFKIKGNR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03733 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 239 IPR013083 -
Vimu11g03733 239 SMART ringv_2 180 239 IPR011016 GO:0008270
Vimu11g03733 239 ProSiteProfiles Zinc finger RING-CH-type profile. 173 239 IPR011016 GO:0008270
Vimu11g03733 239 PANTHER ZINC FINGER, RING-CH-TYPE 77 239 - -
Vimu11g03733 239 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03733 Vimu-Chr11 59382004 59382723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03733 181 239 C3H Transcription Factor Family AT2G37950 44.068 2.67e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03733 - - vra:106779758 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03733 11 59382004 59382723 Vimu11g03733 11 59382004 59382723 ECH
Vimu11g03733 11 59382004 59382723 Vimu2g00795 2 4883067 4883816 PCT