Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03731 ATGTCCACTTCTGATGCCAATGTGAATGACTCCGTGACTGGTCACATTATATCCACTACAATAGGAAGAAAAAATGGGAAGCCCAAACAGACTAGAACTTATCTGGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGGCTAAATGCGTGGAAACTGGGGAGCTAGTGGCCATTAAGAAGGTTTTACAGGACAGAAAAGGCAAGAGTCGTGAGCTACGGTTAATGCGCATGATGGACCATCCAAATGTGATCTCTCTGAAGGACCGTTTCTTTTCCACTACAAGTGAAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCTATGCATCGAGTCTCAAAATTCTATAGTAATACTAATCAGAGCATGCCACTTATCTTTGTAAAACTTTACATGCACCAGATTTTCCGGGGGCTGGCTTATATCCACACTGTCCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGGTTAAAGGTGAAGCTAATTTATCACACATATGTTCACTTTTCTATCGGGCACCCGAACTAATCTTTGGTGCCACTGAGTACACAACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAATTGCTTTTGGGCAAGCCATTATTTCCTGGCGACAATGCAGTGGACCAACTTGTAGAGATTATCAAGGTTCTTGGCACACCCTCCCAAGAGGAAGTTTGCAGTTCAAATTCAAACAACAATGATTTCAAGTTTCCACAGATATTCCACCAAAATATGCCTCCAGAAGCAATTGATCTTACTTCCCGGCTCCTGCAGTATTCCCCAACCCATCGTTGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCAATTGCCAGATGGTCGGCCATTTCCCCCTCTATTCAACTTTAAACAAGAGTTATCCGGAGCTTCTCCAGAGCTTATTGATAAGTTAATACCTGATCATGCGAAGCTACAACATACTCATTTTGGTGGAACATGA 1089 0.4279 MSTSDANVNDSVTGHIISTTIGRKNGKPKQTRTYLAERIVGTGSFGIVFLAKCVETGELVAIKKVLQDRKGKSRELRLMRMMDHPNVISLKDRFFSTTSEDELFLNLVMEYVPESMHRVSKFYSNTNQSMPLIFVKLYMHQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGEANLSHICSLFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGKPLFPGDNAVDQLVEIIKVLGTPSQEEVCSSNSNNNDFKFPQIFHQNMPPEAIDLTSRLLQYSPTHRCTALEACAHPFFDELREPNAQLPDGRPFPPLFNFKQELSGASPELIDKLIPDHAKLQHTHFGGT 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03731 362 CDD STKc_GSK3 29 313 IPR039192 -
Vimu11g03731 362 SUPERFAMILY Protein kinase-like (PK-like) 29 334 IPR011009 -
Vimu11g03731 362 ProSiteProfiles Protein kinase domain profile. 34 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03731 362 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Vimu11g03731 362 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 7 353 - -
Vimu11g03731 362 FunFam Shaggy-related protein kinase kappa 114 353 - -
Vimu11g03731 362 FunFam Glycogen synthase kinase-3 beta 18 113 - -
Vimu11g03731 362 Gene3D Transferase(Phosphotransferase) domain 1 114 353 - -
Vimu11g03731 362 Pfam Protein kinase domain 36 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03731 362 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Vimu11g03731 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Vimu11g03731 362 SMART serkin_6 34 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03731 Vimu-Chr11 59358598 59362349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03731 40 318 Core Cell Cycle Gene Families AT1G76540 35.714 7.79e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vimu11g03731 Pkinase 8.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03731 K14502 - gmx:100812801 640.573