Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03728 ATGAAGCCCCTTTGCAGATTCTTGATTTTCCTATCGCTATTTGCTCTGGTGGAATCTTCATGCACCAGTGAAGAAGAGCATGTTTTGGTGTCAAAGGCTTTTAAATCAGTCTCTGGCTTCAACGCTTACTCCTGGTTTCAAACCAACTGTTCACAAGCTCACATCACCAGAATAGTACTTCCATCCCAAAACCTCACTGGCACAATCTCCTGGGGCTACCTCAGGAACATGTCCAACCTCCAGGTTTTCGATCTCTCGGGTAATTCTTTACAGGGCCACGTGCCAAGCTGGTTCTGGTCAACTTCATCCTTATTGGAAATAAACCTCTCCGGTAACAGGTTCGGAGGGAGCATTATTTTCCACTCCTCCAAACCCACAACACAAAACACCTCGTTTTCAATTTCATCCATTCAAACGCTCAATCTCTCCCACAACAGGTTCACCAATTCAATCCAACTTTCTGCCTTCCAGAACCTTAAAATCCTCGACCTTTCCAACAACAACCTGCGAACACTCCCCTCCGGACTCCAAAACCTCTCCAAGCTTCAACACCTCGATCTCTCATTCTGTAATCTCCAAAGCGACGTAAAACCAGTTTCCTCTCTTCACTCACTTCGCTACTTGGACTTATCGAACAACACCTTCACGGGAAATTTCCCTTTTGATTTCCCTCCACTGGCCACCCTCGAATTCCTTAACATCTCCTATAACAACTTCACCTCATCAACTAGCCCAACCAAGTTCAACAATTTCGGTAAATCAGCTTTTATCCACGCTGGCAACAACTTCACCTACGACAGCACCGCGTCCAAAACGACCAACACCAGTAAAAACTCAGCGCAATCTACCCACAAGAAACAACATAAGCGAAAATCCAAAAGGCTGATTGCTGCAGCGTCGTCTGCGGGATCAGCAGTTGTCCTAATTCTGTTGTCCATTTGGGTACTCCGCATTGTTATTAGGAAGAGGAAGCAACGCGCCAAGAGGAGCAAGTGGGCCATTTCCATGCCGGTTCCACATGGTATGAACGTGGTGACTAGCAGAGTGGAGAAATCAGGGCCGTTTGCTTTCGAGACTGAATCGGGGTCAACGTGGGTGGCTGACCTGAAGGAACCGTCTTCTGCGGCGGTGGTGATGTTCGAGAAGCCGTTGATGAACCTTACTTTCAAGGACCTCATTGTTGCCACGTCACACTTCGGGAAAGACTCGCTGCTCGCGGAGGGAAGGTTTGGGCCCGTTTACAGAGCCGTGCTGCCGGGGGAGCTCCACGTGGCAATCAAGGTCCTGGAACACGCTAGAGACGTTGATCCTGATGAATCGGTCGCCACGTTCGTTGACCTCTCAAGACTGAAGCACCCGAACTTGTTGCCCCTCTCCGGTTACTGCATTGCTGGTAAGGAAAAACTGGTACTGTATGAGTACATGGCAAACGGCGACCTTGGAAGGTGGCTACACGAGCTTCCCACAGGAGACACCAATATAGAAGATTGGACAAACGACACCTGGGAGATTCAAAACGGCGCCGTGGACGACGGATCTCCTGAAAAGATGGGGTGGCTGACACGACATCGTATCGCGGTTGGGATAGCGCGTGGTCTTGCGTACCTGCATCACGCGCGTTCGAAGCCCGTGGTACACGGCCACTTCGTCACCTCCAACATTTTACTCGCAGACGATTTCGAGCCCCGTATCTCCGATTTTGGGTTGCGACACGACCGGAACACGAACGGAGGCACGGAGGCAGACGTGTACTGCTTCGGGGCGGCGCTGATGGAGCTCCTAACGGGGAAGGAAAGTACGGCGGAGAAGGTGGCAGCGGCGAGAAAGGCGGTGAGGGAGGGGCAGGGTGTTAGGGTTCTGGACGAAAGGCTCCTGCTCGGTGGTGACTCACTGGTGAGTGAGATGGTGGAGACTCTCCGAGTGGCGTTTTTGTGTACGGCGGAAGACCCTAGGAAGAGGCCCACAATGCAGCAGATTTTGGGTTTGCTGATAGATATTCGTCCTCATCAACATCAACAGAGCAACTCGTGA 2031 0.5116 MKPLCRFLIFLSLFALVESSCTSEEEHVLVSKAFKSVSGFNAYSWFQTNCSQAHITRIVLPSQNLTGTISWGYLRNMSNLQVFDLSGNSLQGHVPSWFWSTSSLLEINLSGNRFGGSIIFHSSKPTTQNTSFSISSIQTLNLSHNRFTNSIQLSAFQNLKILDLSNNNLRTLPSGLQNLSKLQHLDLSFCNLQSDVKPVSSLHSLRYLDLSNNTFTGNFPFDFPPLATLEFLNISYNNFTSSTSPTKFNNFGKSAFIHAGNNFTYDSTASKTTNTSKNSAQSTHKKQHKRKSKRLIAAASSAGSAVVLILLSIWVLRIVIRKRKQRAKRSKWAISMPVPHGMNVVTSRVEKSGPFAFETESGSTWVADLKEPSSAAVVMFEKPLMNLTFKDLIVATSHFGKDSLLAEGRFGPVYRAVLPGELHVAIKVLEHARDVDPDESVATFVDLSRLKHPNLLPLSGYCIAGKEKLVLYEYMANGDLGRWLHELPTGDTNIEDWTNDTWEIQNGAVDDGSPEKMGWLTRHRIAVGIARGLAYLHHARSKPVVHGHFVTSNILLADDFEPRISDFGLRHDRNTNGGTEADVYCFGAALMELLTGKESTAEKVAAARKAVREGQGVRVLDERLLLGGDSLVSEMVETLRVAFLCTAEDPRKRPTMQQILGLLIDIRPHQHQQSNS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03728 676 Gene3D Transferase(Phosphotransferase) domain 1 577 676 - -
Vimu11g03728 676 ProSiteProfiles Leucine-rich repeat profile. 158 180 IPR001611 GO:0005515
Vimu11g03728 676 SUPERFAMILY Protein kinase-like (PK-like) 377 666 IPR011009 -
Vimu11g03728 676 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 50 666 - -
Vimu11g03728 676 Gene3D Transferase(Phosphotransferase) domain 1 475 576 - -
Vimu11g03728 676 Gene3D Phosphorylase Kinase; domain 1 359 474 - -
Vimu11g03728 676 SMART LRR_typ_2 156 178 IPR003591 -
Vimu11g03728 676 SMART LRR_typ_2 179 203 IPR003591 -
Vimu11g03728 676 SMART LRR_typ_2 77 100 IPR003591 -
Vimu11g03728 676 SUPERFAMILY L domain-like 44 243 - -
Vimu11g03728 676 MobiDBLite consensus disorder prediction 269 292 - -
Vimu11g03728 676 FunFam Putative LRR receptor-like serine/threonine-protein kinase 360 474 - -
Vimu11g03728 676 Pfam Leucine rich repeat 136 192 IPR001611 GO:0005515
Vimu11g03728 676 Pfam Leucine rich repeat 55 114 IPR001611 GO:0005515
Vimu11g03728 676 ProSiteProfiles Protein kinase domain profile. 399 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03728 676 FunFam Calmodulin-binding receptor kinase CaMRLK 135 244 - -
Vimu11g03728 676 Gene3D Ribonuclease Inhibitor 17 132 IPR032675 -
Vimu11g03728 676 Pfam Protein tyrosine and serine/threonine kinase 403 573 IPR001245 GO:0004672|GO:0006468
Vimu11g03728 676 Gene3D Ribonuclease Inhibitor 133 302 IPR032675 -
Vimu11g03728 676 PRINTS Leucine-rich repeat signature 159 172 - -
Vimu11g03728 676 PRINTS Leucine-rich repeat signature 202 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03728 Vimu-Chr11 59325121 59327610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03728 53 666 Receptor kinase-like Gene Family AT5G07280 31.420 9.22e-77 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vimu11g03728 PK_Tyr_Ser-Thr 6.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03728 - - gmx:100788556 1041.57