Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03725 ATGTCGGATGAATATGAGATGAGTGATGAACAGGTTGATGACAGTTCAATAGGATCATCGCAAAAGTGTTCATCCTTTGATCTGAATGAAGAAGCTAGTAGTGAAAATAATAGCAAGGACAATGATACGAGGTACGAGGAAGCTAAGGATGAAGGTACTTCAACAAATAAAAGTAGCAGCATAACAAGGGAAGGAAATAGTGAACGAAGAGGTGGTGTGAGACAATATGTTAGATCAAAGATGCCTAGGCTTCGTTGGACACCTGAACTTCATCTTTCCTTTGTGCATGCTGTTGAAAGGCTTGGAGGTCAAGAGAGAGCAACGCCGAAGTTGGTGCTTCAGCTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCATTTGCAGATGTACCGGAGCAAGAAACTCGATGAGGCCGGCCAAGTATTAAGTGAAACATACAAATCATCCCACGAACTTGGTCGTATTTCTCATGTGACCCATCCTCGTCAACATTTTAAGATGGGAAATGGTGGAATTATTCTAGCAAGTGATTACACCGATCACAGTTATTACCATGGTCTCTTGCATCCTTCAAACCTATCACACTCACATTCAAAAGCCATAGATTCAAGACACCAACACTGGTTCTTCAACAACCATCAACCTTTTAGAAAACCAAGTTACTTTAGCAACGAAGTTGGCTCAGCAACCTTACAAACGCAAGCAAGATCAATGTCGTCAAACCAAATTCAAGTAATGGATGCTACCAGCATTGCACCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAGATGGCCTCCATTAGAAATCATGAACAGCCACCCCTGGAAGAAAAGGTTACCTTCTAATACTGAGTCAAAATCTGTTCTTCTTCATCAATTTGGCTCCACAACTTCACCACCATCTCTTAGACCAACTGAGTTAAACTTCCCAAACAAAACAAGAATCAGGGAACATCTATCTAACTCCGATGAGCATCGCAGTTATTCCAACGCTTTCAATCCAGAATTTGAACCTCCCTTTCGGATTAAGTCGAATCAAGAAAAAATGCAGAAAGAGAAGCAATGGGTGCCTGATCTGCGGCTGAGTTTAAGTCAGAGAGATGGCAACAGTGATGGAAAGAATGATCATTGCAGAGAAACCCAAGAAATCAACACGAAACTTTCACTTTCATAG 1185 0.4143 MSDEYEMSDEQVDDSSIGSSQKCSSFDLNEEASSENNSKDNDTRYEEAKDEGTSTNKSSSITREGNSERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSETYKSSHELGRISHVTHPRQHFKMGNGGIILASDYTDHSYYHGLLHPSNLSHSHSKAIDSRHQHWFFNNHQPFRKPSYFSNEVGSATLQTQARSMSSNQIQVMDATSIAPMRPSQFLEEKRWPPLEIMNSHPWKKRLPSNTESKSVLLHQFGSTTSPPSLRPTELNFPNKTRIREHLSNSDEHRSYSNAFNPEFEPPFRIKSNQEKMQKEKQWVPDLRLSLSQRDGNSDGKNDHCRETQEINTKLSLS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03725 394 Gene3D - 81 138 - -
Vimu11g03725 394 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 137 IPR006447 GO:0003677
Vimu11g03725 394 SUPERFAMILY Homeodomain-like 80 136 IPR009057 -
Vimu11g03725 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 138 IPR017930 -
Vimu11g03725 394 MobiDBLite consensus disorder prediction 33 53 - -
Vimu11g03725 394 FunFam Myb family transcription factor 80 138 - -
Vimu11g03725 394 MobiDBLite consensus disorder prediction 12 32 - -
Vimu11g03725 394 Pfam Myb-like DNA-binding domain 84 134 IPR001005 -
Vimu11g03725 394 MobiDBLite consensus disorder prediction 324 343 - -
Vimu11g03725 394 MobiDBLite consensus disorder prediction 351 394 - -
Vimu11g03725 394 MobiDBLite consensus disorder prediction 1 76 - -
Vimu11g03725 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 55 227 IPR046955 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03725 Vimu-Chr11 59288308 59293010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03725 73 139 G2-like Transcription Factor Family AT2G42660 82.090 1.48e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu11g03725 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03725 - - gmx:100808625 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03725 11 59288308 59293010 Vimu11g03725 11 59288308 59293010 ECH
Vimu2g00784 2 4796305 4797553 Vimu11g03725 11 59288308 59293010 ECH
Vimu11g03725 11 59288308 59293010 Vimu2g00784 2 4796305 4797553 PCT