Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03724 ATGGATATTACAGGATTATCCTTGTTGGAATTTCGGGGAGGAATAACTTCTGATCCTTTTCATGCTCTGTCAAATTGGAACCCAAATGATTGTAACCCTTGCCAGTGGTATGGTGTTCGTTGTGTAGGTGGTAAAGTGCGAATGCTGGTCCTACCTGAGCTATCTTTGGAAGGCACATTGGCTCCTGAGCTTGGGAAACTTAGTCATCTAAAATCGCTTATATTATACAAGAACCGTTTTTCTGGTACTATTCCCGAAGAACTTGGTGATCTAGACAAGCTGAAGTTATTGGATTTAAGGGGGAATAACATGACTGGATGTGTCCCAGCAGAAATTGGCCATTTGTTGTTGTCAGAACAATTGTTCATTTGTGACAAGAAATGTGAAAGCAGTGATTCTCAAGGGATTGGAAAGCTCAGGTTGCCTTGTAGTATCAATCTTTCAACTCGTTTGACAACTTCATCAGTTGGAAAAAACCGAAAGGTTGCACCTAGGCTCAAGCTAGTAAAGGCCACCCCTCATGCCAATGCAGAGAAATGGTGTGGCATTCTGACTGGCGCTGATGATTCAGAGATTGACCAGAATGTAGATAATGTAGTCAATTCAGCACGACGGAAGTTGCTTGATCAGTCCAGTAACCTTGCAGCTGCACCTTTCAGTGGTGGGCCTACTATACAGATCAGTTATATTCCAATTACCCAGAGCAGTGGAGCTTTTCCAGCCTTCCCAGACGCCAATAAGCAACAGAATCAGTCACCTGGACAATTGCCTTCAACTTCTAATCTTACACCTACGAGTCAAACAAATCAACCAAATTTAGCTAATGTTGCTTCTGGAAAATTATGGGAGTATATTACCATAATAGCAGGTGTAGCTGTCTTGGTCATTATTGTTTTGATCATGCTTTGCATTTGGCGAAAACGAGCAGCAAAAGTAATAAAGCCATGGAAAACAGGAATAAGTGGACAGCTGCAGAAAGCATTTATAACAGGTATTATTTTTAGTAAATATGAGGCTGTGTTTAACAGCATTATTATTAGTGTTCACCAAAGAATTTCAGATTCCTTAAAGAACTTGACGGCAGAGCTGGAGACAGCCTGTGAAGATTTCAGCAATATTATTAATACTTTTGATGAATGCACCATATATAAGGGAACACTATCCAGTGGAGTCGAGATTGCTGTTGATTCAACTATTGTTACTTCGGCCCGTGATTGGTCAAAGACAATGGAGACGGCCTATCGCAAAAAGATTGCCACATTATCACGTGTTAACCATAAGAACTTTACCAATCTTATTGGGTACTGTGATGAAGAAGAACCATTCACCAGGATGATGGTCTTTGAGTATGCTCCGAATGGAAGCTTATTTGAGCATCTGCATGGTAACGCAGCGGATCTGATTGAAGGCTTAGTTAAGGAAGTTGAACCTCTTGACTGGAGCGCAAGAATGAGGGTTATTATGGGCACAGCATACTGTCTTCAGTATATGCACCATGATCTGAATCCACCAGTAGCTCATTCCAACCTCAATTCCGTTGCTATATTGTTGACGGATGACTTTGCTGCTAAGATATCAGAAATAGCTTTTGGCAAGAATGTATCATCACAAGCCAACACACCTGGACATGAGTCACATAAATGTGACTTGCCACCCCATGCTGATCCTGAAACCGATGTCTACAACTTTGGAGTGTTGTTGCTTGAAATCATTTCCGGAAAACTACCATACTCTGAAGAACATGGCCACATTACTGACTGGGCTGCTGAGCACTTGAATAATAAGGAAAGCGTCAGCAATCTGATTGATCCCTCGTTGGAGTCCTTCAAGGGAGAAGAACTTGATGTCATCTGTGAGGTGATCAAAGAATGTCTTCAATCTGATGCAAGGCTAAGACCATCGATGAAAGACATAGCTCCCAGATTGAGGGAAGTGCTTCATGTATCACCTGAACAAGCTGTCCCTAGACTCTCTCCCCTATGGTGGGCTGAACTGGAGATCTTATCATTGGAGACCAGTTAA 2022 0.4199 MDITGLSLLEFRGGITSDPFHALSNWNPNDCNPCQWYGVRCVGGKVRMLVLPELSLEGTLAPELGKLSHLKSLILYKNRFSGTIPEELGDLDKLKLLDLRGNNMTGCVPAEIGHLLLSEQLFICDKKCESSDSQGIGKLRLPCSINLSTRLTTSSVGKNRKVAPRLKLVKATPHANAEKWCGILTGADDSEIDQNVDNVVNSARRKLLDQSSNLAAAPFSGGPTIQISYIPITQSSGAFPAFPDANKQQNQSPGQLPSTSNLTPTSQTNQPNLANVASGKLWEYITIIAGVAVLVIIVLIMLCIWRKRAAKVIKPWKTGISGQLQKAFITGIIFSKYEAVFNSIIISVHQRISDSLKNLTAELETACEDFSNIINTFDECTIYKGTLSSGVEIAVDSTIVTSARDWSKTMETAYRKKIATLSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGSLFEHLHGNAADLIEGLVKEVEPLDWSARMRVIMGTAYCLQYMHHDLNPPVAHSNLNSVAILLTDDFAAKISEIAFGKNVSSQANTPGHESHKCDLPPHADPETDVYNFGVLLLEIISGKLPYSEEHGHITDWAAEHLNNKESVSNLIDPSLESFKGEELDVICEVIKECLQSDARLRPSMKDIAPRLREVLHVSPEQAVPRLSPLWWAELEILSLETS 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03724 673 Gene3D Phosphorylase Kinase; domain 1 337 450 - -
Vimu11g03724 673 MobiDBLite consensus disorder prediction 241 269 - -
Vimu11g03724 673 FunFam Inactive receptor-like serine/threonine-protein kinase 345 450 - -
Vimu11g03724 673 PANTHER PROTEIN MALE DISCOVERER 2 5 670 - -
Vimu11g03724 673 ProSiteProfiles Protein kinase domain profile. 368 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03724 673 Gene3D Ribonuclease Inhibitor 5 182 IPR032675 -
Vimu11g03724 673 Pfam Protein tyrosine and serine/threonine kinase 382 641 IPR001245 GO:0004672|GO:0006468
Vimu11g03724 673 SUPERFAMILY Protein kinase-like (PK-like) 374 642 IPR011009 -
Vimu11g03724 673 Gene3D Transferase(Phosphotransferase) domain 1 451 654 - -
Vimu11g03724 673 SUPERFAMILY L domain-like 11 139 - -
Vimu11g03724 673 Pfam Leucine rich repeat N-terminal domain 6 41 IPR013210 -
Vimu11g03724 673 FunFam Leucine-rich repeat receptor-like kinase 6 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03724 Vimu-Chr11 59255442 59260323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03724 23 645 Receptor kinase-like Gene Family AT5G56040 24.741 4.88e-46 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vimu11g03724 PK_Tyr_Ser-Thr 2.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03724 - - gmx:100808098 934.865